Variant report

Variant	rs11737828
Chromosome Location	chr4:148709026-148709027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10006193	0.86[ASN][1000 genomes]
rs10011328	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10012122	0.85[AFR][1000 genomes]
rs11733543	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12508085	0.80[ASN][1000 genomes]
rs13115978	0.86[ASN][1000 genomes]
rs17023841	0.87[ASN][1000 genomes]
rs2174220	0.93[ASN][1000 genomes]
rs4490438	0.86[ASN][1000 genomes]
rs56946313	0.86[ASN][1000 genomes]
rs6828600	0.86[ASN][1000 genomes]
rs7669809	0.86[ASN][1000 genomes]
rs7680867	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7698166	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880242	chr4:148659137-148727355	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148701800-148716800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:148702000-148709600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:148702000-148710200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:148702000-148714600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:148703600-148710200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:148703800-148713200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr4:148704000-148710800	Weak transcription	HUVEC	blood vessel
8	chr4:148704000-148714600	Weak transcription	Fetal Intestine Small	intestine
9	chr4:148706200-148709200	Enhancers	NHEK	skin
10	chr4:148706400-148710600	Enhancers	Fetal Heart	heart
11	chr4:148706400-148710600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr4:148706400-148710600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr4:148706400-148711000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:148706400-148711000	Enhancers	Fetal Stomach	stomach
15	chr4:148706400-148711200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:148706400-148712000	Enhancers	Colon Smooth Muscle	Colon
17	chr4:148706600-148709200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:148706600-148713400	Weak transcription	Thymus	Thymus
19	chr4:148707000-148709200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr4:148707000-148710400	Enhancers	HSMM	muscle
21	chr4:148707000-148711400	Enhancers	Adipose Nuclei	Adipose
22	chr4:148707000-148711400	Enhancers	Fetal Muscle Leg	muscle
23	chr4:148707000-148711600	Enhancers	Stomach Mucosa	stomach
24	chr4:148707400-148710400	Enhancers	Gastric	stomach
25	chr4:148707400-148710800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:148707400-148710800	Enhancers	Right Atrium	heart
27	chr4:148707400-148711000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:148707400-148711000	Enhancers	NHLF	lung
29	chr4:148707400-148711400	Enhancers	Left Ventricle	heart
30	chr4:148707400-148711400	Enhancers	Ovary	ovary
31	chr4:148707600-148710000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:148707600-148710000	Weak transcription	Fetal Kidney	kidney
33	chr4:148707600-148710800	Enhancers	GM12878-XiMat	blood
34	chr4:148707800-148710200	Weak transcription	Fetal Thymus	thymus
35	chr4:148707800-148710400	Enhancers	Rectal Smooth Muscle	rectum
36	chr4:148707800-148711600	Enhancers	NHDF-Ad	bronchial
37	chr4:148707800-148714600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr4:148708000-148709200	Enhancers	Osteobl	bone
39	chr4:148708000-148709600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr4:148708000-148713000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr4:148708200-148710600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:148708400-148709200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr4:148708400-148710800	Enhancers	Fetal Muscle Trunk	muscle
44	chr4:148708400-148714800	Weak transcription	Small Intestine	intestine
45	chr4:148708400-148721200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:148708600-148710800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:148708600-148713400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr4:148708800-148709600	Weak transcription	Fetal Lung	lung
49	chr4:148708800-148710000	Enhancers	Stomach Smooth Muscle	stomach
50	chr4:148708800-148710200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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