The 2.0 version of rSNPBase

Variant report

Variant rs11738931
Chromosome Location chr5:5427620-5427621
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:5424000-5427800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
2 chr5:5424000-5428400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
3 chr5:5424200-5427800 Enhancers Primary T helper cells fromperipheralblood blood
4 chr5:5424400-5428200 Weak transcription Aorta Aorta
5 chr5:5424400-5428600 Enhancers Primary T killer memory cells from peripheral blood blood
6 chr5:5424400-5431400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr5:5424400-5433000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
8 chr5:5424400-5433000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr5:5424400-5436800 Weak transcription Primary monocytes fromperipheralblood blood
10 chr5:5424400-5437200 Weak transcription Fetal Thymus thymus
11 chr5:5424400-5437400 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr5:5424400-5437600 Weak transcription Placenta Placenta
13 chr5:5424600-5428600 Weak transcription Fetal Intestine Small intestine
14 chr5:5424600-5430200 Weak transcription Fetal Heart heart
15 chr5:5424600-5430200 ZNF genes & repeats A549 lung
16 chr5:5424800-5432200 Weak transcription iPS-20b Cell Line embryonic stem cell
17 chr5:5424800-5436600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr5:5424800-5437600 Weak transcription Fetal Kidney kidney
19 chr5:5425000-5430200 Weak transcription HSMMtube muscle
20 chr5:5425000-5431400 Weak transcription HMEC breast
21 chr5:5425000-5432200 Weak transcription iPS-15b Cell Line embryonic stem cell
22 chr5:5425000-5432200 Weak transcription Primary B cells from cord blood blood
23 chr5:5425000-5436600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr5:5425000-5436600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
25 chr5:5425000-5437200 Weak transcription HUES48 Cell Line embryonic stem cell
26 chr5:5425000-5437200 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr5:5425000-5437600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr5:5425000-5437800 Weak transcription Fetal Muscle Trunk muscle
29 chr5:5425000-5443600 Weak transcription Fetal Muscle Leg muscle
30 chr5:5425200-5428200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr5:5425200-5429200 Weak transcription Left Ventricle heart
32 chr5:5425200-5429200 Weak transcription Spleen Spleen
33 chr5:5425200-5429400 Weak transcription Lung lung
34 chr5:5425200-5430200 Weak transcription Osteobl bone
35 chr5:5425200-5431000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr5:5425200-5431600 Weak transcription NHEK skin
37 chr5:5425200-5432200 Weak transcription HUES64 Cell Line embryonic stem cell
38 chr5:5425200-5432200 Weak transcription NHDF-Ad bronchial
39 chr5:5425200-5432400 Weak transcription ES-I3 Cell Line embryonic stem cell
40 chr5:5425200-5433000 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr5:5425200-5434800 Enhancers Skeletal Muscle Female skeletal muscle
42 chr5:5425200-5436800 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr5:5425200-5439000 Weak transcription Primary hematopoietic stem cells blood
44 chr5:5425200-5443200 Weak transcription Fetal Brain Male brain
45 chr5:5425200-5443600 Weak transcription H9 Cell Line embryonic stem cell
46 chr5:5425200-5443600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr5:5425200-5443600 Weak transcription Pancreas Pancrea
48 chr5:5425200-5443800 Weak transcription Esophagus oesophagus
49 chr5:5425400-5428000 Weak transcription Psoas Muscle Psoas
50 chr5:5425400-5428800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015