Variant report

Variant	rs11738984
Chromosome Location	chr5:36233663-36233664
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36190171..36192494-chr5:36233425..36235880,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10941281	1.00[YRI][hapmap]
rs12522905	1.00[YRI][hapmap]
rs6867703	1.00[JPT][hapmap]
rs6890702	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36196600-36236600	Weak transcription	GM12878-XiMat	blood
2	chr5:36198000-36238400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:36200200-36239400	Weak transcription	Fetal Brain Male	brain
4	chr5:36201400-36240000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:36213200-36237000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:36215200-36236600	Weak transcription	Small Intestine	intestine
7	chr5:36215800-36237800	Weak transcription	HMEC	breast
8	chr5:36221200-36238800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:36221600-36235600	Weak transcription	Fetal Kidney	kidney
10	chr5:36221600-36236200	Weak transcription	Fetal Intestine Small	intestine
11	chr5:36221600-36238600	Weak transcription	Fetal Stomach	stomach
12	chr5:36221600-36239800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr5:36225200-36237800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:36225400-36237800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:36225400-36237800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:36225600-36239800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr5:36225800-36237800	Weak transcription	Fetal Lung	lung
18	chr5:36226000-36236600	Weak transcription	Fetal Intestine Large	intestine
19	chr5:36226000-36237000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr5:36226000-36237200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr5:36226000-36239800	Weak transcription	Fetal Brain Female	brain
22	chr5:36226000-36240400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr5:36226000-36240400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr5:36226200-36237000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr5:36226400-36239200	Weak transcription	Brain Angular Gyrus	brain
26	chr5:36226600-36236600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr5:36226600-36237000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:36226600-36237800	Weak transcription	Brain Anterior Caudate	brain
29	chr5:36226600-36237800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr5:36226600-36237800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr5:36226600-36237800	Weak transcription	Dnd41	blood
32	chr5:36226600-36238000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr5:36226600-36239200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr5:36226600-36239400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr5:36226600-36240000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:36226800-36236800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr5:36226800-36237400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:36226800-36237800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr5:36226800-36237800	Weak transcription	Hela-S3	cervix
40	chr5:36226800-36238000	Weak transcription	Adipose Nuclei	Adipose
41	chr5:36226800-36238200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr5:36227000-36236600	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr5:36227000-36237800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:36227000-36239200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr5:36228600-36237000	Weak transcription	NHEK	skin
46	chr5:36229000-36236800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr5:36229000-36237800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr5:36230400-36237000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr5:36230400-36237800	Weak transcription	Aorta	Aorta
50	chr5:36230400-36237800	Weak transcription	Ovary	ovary

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