Variant report

Variant	rs11739531
Chromosome Location	chr5:40629347-40629348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2221490	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2888173	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4133101	0.88[CEU][hapmap];0.95[JPT][hapmap]
rs4434423	0.82[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs4546432	0.87[CEU][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap]
rs4607392	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs4957331	0.86[AMR][1000 genomes]
rs4957332	0.86[AMR][1000 genomes]
rs6451533	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6882769	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7716982	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7730020	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11739531	RPL37	Cis_1M	lymphoblastoid	RTeQTL
rs11739531	TTC33	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40620800-40634200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:40624800-40634200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr5:40625000-40630200	Weak transcription	Dnd41	blood
4	chr5:40627400-40629600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:40628000-40629600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr5:40628800-40630200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr5:40628800-40630200	Weak transcription	Primary T cells from cord blood	blood
8	chr5:40628800-40630200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr5:40629200-40629600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:40629200-40630200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:40629200-40630200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:40629200-40630200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr5:40629200-40630400	Weak transcription	Primary B cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links