Variant report

Variant	rs11739558
Chromosome Location	chr5:5281857-5281858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10036927	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11748587	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12659042	0.88[AFR][1000 genomes]
rs13179772	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4266372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4277882	0.88[AFR][1000 genomes]
rs4398607	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6865947	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9688232	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5265200-5282600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:5271800-5291400	Weak transcription	Ovary	ovary
3	chr5:5272000-5283600	Weak transcription	Fetal Kidney	kidney
4	chr5:5272400-5298400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:5273200-5283200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:5273600-5283400	Weak transcription	Pancreas	Pancrea
7	chr5:5277000-5291400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:5279400-5288800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:5279600-5283600	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links