Variant report

Variant	rs11739862
Chromosome Location	chr5:117583284-117583285
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10040506	0.82[AMR][1000 genomes]
rs10042731	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10056187	0.83[AMR][1000 genomes]
rs10519541	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1074705	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11741705	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11748351	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11748941	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1382729	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1382731	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1382732	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1382733	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1382734	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1382735	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1382736	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1382737	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1382738	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1479214	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1479219	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1479220	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17143900	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17143903	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17143923	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368151	0.86[AMR][1000 genomes]
rs1871366	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2416509	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28471035	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28473044	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34339507	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34434678	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41456648	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4412141	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4555864	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4555865	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4635967	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5000371	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs5004250	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56090853	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56118268	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56280351	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57486817	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58867284	1.00[ASN][1000 genomes]
rs60815054	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60923242	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61184343	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6595103	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6595104	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6595106	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6595107	0.80[EUR][1000 genomes]
rs6860479	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6860878	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6863718	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6865078	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6877140	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6877628	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6880921	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6881936	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6895310	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73241696	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73243413	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7341174	1.00[ASN][1000 genomes]
rs7341175	0.86[AMR][1000 genomes]
rs7447026	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7718566	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9327069	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027428	chr5:117072745-118036353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv537877	chr5:117072745-118036353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1067621	chr5:117102544-118036352	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv531292	chr5:117102544-118036352	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv2422395	chr5:117442806-117887910	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv882762	chr5:117499480-117706786	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv599526	chr5:117580961-117612080	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117583000-117583800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
2	chr5:117583200-117583400	Enhancers	Right Atrium	heart
3	chr5:117583200-117583600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:117583200-117583800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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