Variant report

Variant	rs11739869
Chromosome Location	chr5:107124000-107124001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10515377	0.93[ASN][1000 genomes]
rs11742515	0.90[ASN][1000 genomes]
rs12153448	0.93[ASN][1000 genomes]
rs13159249	0.90[ASN][1000 genomes]
rs13159307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13179594	0.93[ASN][1000 genomes]
rs6862116	0.91[ASN][1000 genomes]
rs6871240	0.86[ASN][1000 genomes]
rs6876754	0.93[ASN][1000 genomes]
rs6881288	0.93[ASN][1000 genomes]
rs6888208	0.93[ASN][1000 genomes]
rs6892712	0.93[ASN][1000 genomes]
rs6898244	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107116800-107124400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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