Variant report

Variant	rs1174
Chromosome Location	chr7:101208771-101208772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101207965..101209956-chr7:101246300..101248561,2	MCF-7	breast:
2	chr7:101206668..101209000-chr7:101457248..101459905,2	MCF-7	breast:
3	chr7:101207656..101210321-chr7:101214557..101217870,3	MCF-7	breast:
4	chr7:101189298..101191997-chr7:101207833..101210314,2	MCF-7	breast:
5	chr7:101206824..101211807-chr7:101212192..101215584,4	K562	blood:
6	chr7:101208216..101210386-chr7:101212192..101214144,2	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYL10-1	chr7:101208589-101209913	XLOC_006548
2	lnc-MYL10-1	chr7:101208599-101210760	XLOC_006548
3	lnc-MYL10-1	chr7:101208597-101210760	ENSG00000233123
4	lnc-MYL10-1	chr7:101208586-101209913	ENSG00000233123
5	lnc-MYL10-1	chr7:101208607-101210760	NONHSAT122471
6	lnc-MYL10-1	chr7:101208587-101210760	NR_103747
7	lnc-MYL10-1	chr7:101208587-101209913	NR_103748

No data

No data

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1046516	0.84[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11982657	0.90[EUR][1000 genomes]
rs17135631	0.99[EUR][1000 genomes]
rs17393028	0.83[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17471501	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62465119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62465120	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62465121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62465122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62465124	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62466270	0.87[AFR][1000 genomes]
rs62466272	0.87[AFR][1000 genomes]
rs6954825	0.89[CEU][hapmap];0.97[EUR][1000 genomes]
rs6954979	0.99[EUR][1000 genomes]
rs6955330	0.91[CEU][hapmap];0.99[EUR][1000 genomes]
rs6955500	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6972341	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv888821	chr7:101091470-101311540	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831078	chr7:101094945-101257486	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv888822	chr7:101105017-101330734	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv888824	chr7:101109073-101330734	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv1796652	chr7:101156017-101219459	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv888825	chr7:101168283-101330734	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv818542	chr7:101202840-101208943	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv3325020	chr7:101206682-101209580	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101206400-101209000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:101207600-101209000	Enhancers	Fetal Muscle Leg	muscle
3	chr7:101208200-101208800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:101208200-101209200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:101208200-101210200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:101208400-101210000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:101208400-101210200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:101208600-101210000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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