Variant report

Variant	rs11741599
Chromosome Location	chr5:90245929-90245930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90239703..90242534-chr5:90244285..90246060,2	MCF-7	breast:
2	chr5:90242754..90246158-chr5:90247864..90250143,3	K562	blood:
3	chr5:90236183..90238569-chr5:90244503..90246881,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10051346	0.89[ASN][1000 genomes]
rs10054039	0.89[ASN][1000 genomes]
rs10056755	0.88[ASN][1000 genomes]
rs10073898	0.89[ASN][1000 genomes]
rs10079045	0.89[ASN][1000 genomes]
rs10079051	0.87[ASN][1000 genomes]
rs10942621	0.91[ASN][1000 genomes]
rs11742679	0.89[ASN][1000 genomes]
rs11742722	0.87[ASN][1000 genomes]
rs11744110	0.89[ASN][1000 genomes]
rs11747245	0.89[ASN][1000 genomes]
rs11747280	0.89[ASN][1000 genomes]
rs11957689	0.91[ASN][1000 genomes]
rs12514684	0.89[ASN][1000 genomes]
rs12523056	0.91[ASN][1000 genomes]
rs12523094	0.91[ASN][1000 genomes]
rs12653061	0.91[ASN][1000 genomes]
rs12659201	0.91[ASN][1000 genomes]
rs16869305	0.88[ASN][1000 genomes]
rs17633569	0.88[ASN][1000 genomes]
rs1995774	0.89[ASN][1000 genomes]
rs1995775	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2367181	0.85[EUR][1000 genomes]
rs28368305	0.83[ASN][1000 genomes]
rs3105793	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34088804	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4916831	0.82[ASN][1000 genomes]
rs4916833	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57190680	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60325490	0.89[ASN][1000 genomes]
rs60873835	0.81[AMR][1000 genomes]
rs61424527	0.82[ASN][1000 genomes]
rs62374016	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6452918	0.85[ASN][1000 genomes]
rs6452919	0.83[ASN][1000 genomes]
rs6452920	0.81[ASN][1000 genomes]
rs6452921	0.80[ASN][1000 genomes]
rs67257239	0.88[ASN][1000 genomes]
rs6859871	0.89[ASN][1000 genomes]
rs6860068	0.89[ASN][1000 genomes]
rs6865241	0.90[ASN][1000 genomes]
rs6865267	0.90[ASN][1000 genomes]
rs6865883	0.87[ASN][1000 genomes]
rs6868512	0.89[ASN][1000 genomes]
rs6870988	0.89[ASN][1000 genomes]
rs6871445	0.89[ASN][1000 genomes]
rs6871542	0.90[ASN][1000 genomes]
rs6874280	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6879563	0.90[ASN][1000 genomes]
rs6881586	0.89[ASN][1000 genomes]
rs6881722	0.89[ASN][1000 genomes]
rs6883495	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6884254	0.90[ASN][1000 genomes]
rs6887203	0.88[ASN][1000 genomes]
rs6891672	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6896506	0.85[ASN][1000 genomes]
rs7704311	0.87[ASN][1000 genomes]
rs7704653	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7733911	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90230400-90265200	Weak transcription	K562	blood
2	chr5:90231600-90250800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:90236800-90263200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:90237400-90246400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:90242600-90261000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:90245000-90246200	Enhancers	Fetal Intestine Large	intestine
7	chr5:90245200-90246000	Enhancers	Liver	Liver
8	chr5:90245400-90246000	Enhancers	Duodenum Mucosa	Duodenum
9	chr5:90245400-90246400	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr5:90245600-90246200	Active TSS	A549	lung
11	chr5:90245600-90247000	Enhancers	HepG2	liver

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