Variant report

Variant rs11741728
Chromosome Location chr5:36442527-36442528
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:36438600-36443000 Enhancers Brain Hippocampus Middle brain
2 chr5:36438800-36442600 Enhancers Brain Germinal Matrix brain
3 chr5:36438800-36442600 Enhancers Hela-S3 cervix
4 chr5:36439200-36446600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr5:36439800-36446400 Enhancers Cortex derived primary cultured neurospheres brain
6 chr5:36440000-36444600 Weak transcription Fetal Muscle Trunk muscle
7 chr5:36440200-36444200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr5:36440200-36444200 Weak transcription Brain Inferior Temporal Lobe brain
9 chr5:36440600-36445600 Enhancers Stomach Mucosa stomach
10 chr5:36440600-36445800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
11 chr5:36440800-36442600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
12 chr5:36441200-36444200 Weak transcription Fetal Kidney kidney
13 chr5:36441600-36443600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr5:36441600-36446600 Enhancers Placenta Placenta
15 chr5:36441800-36442600 Enhancers NHEK skin
16 chr5:36441800-36442800 Enhancers Esophagus oesophagus
17 chr5:36441800-36443000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr5:36441800-36443000 Enhancers Brain Anterior Caudate brain
19 chr5:36441800-36443200 Enhancers ES-I3 Cell Line embryonic stem cell
20 chr5:36441800-36445400 Enhancers HMEC breast
21 chr5:36441800-36445600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr5:36441800-36446000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr5:36442000-36442800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
24 chr5:36442000-36443200 Enhancers HUES6 Cell Line embryonic stem cell
25 chr5:36442000-36443200 Enhancers HepG2 liver
26 chr5:36442000-36443400 Enhancers Fetal Intestine Large intestine
27 chr5:36442200-36442600 Weak transcription Gastric stomach
28 chr5:36442200-36442800 Enhancers Breast Myoepithelial Primary Cells Breast
29 chr5:36442200-36442800 Enhancers Fetal Intestine Small intestine
30 chr5:36442200-36442800 Enhancers Pancreas Pancrea
31 chr5:36442200-36443200 Enhancers iPS-18 Cell Line embryonic stem cell
32 chr5:36442200-36443200 Enhancers GM12878-XiMat blood
33 chr5:36442200-36444200 Weak transcription Brain Cingulate Gyrus brain
34 chr5:36442200-36444600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr5:36442200-36444800 Weak transcription Fetal Brain Female brain
36 chr5:36442400-36442800 Enhancers Fetal Thymus thymus
37 chr5:36442400-36443200 Flanking Active TSS K562 blood
38 chr5:36442400-36444200 Weak transcription Brain Substantia Nigra brain
39 chr5:36442400-36445000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr5:36442400-36445400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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