Variant report

Variant	rs11741945
Chromosome Location	chr5:113811947-113811948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11241279	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11241280	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11241281	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11745974	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12153735	0.84[AFR][1000 genomes]
rs12187240	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12516617	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13168840	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13188819	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1364934	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1380477	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1380478	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1459781	0.83[AFR][1000 genomes]
rs1895776	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34333534	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34565875	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs36083903	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6884289	0.86[AFR][1000 genomes]
rs72801872	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv830452	chr5:113798617-113975228	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113793600-113812800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr5:113793800-113812800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:113794200-113813400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:113800200-113813600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:113803200-113816000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:113809600-113814400	Weak transcription	Liver	Liver
7	chr5:113811600-113812800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:113811600-113813000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:113811600-113813200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:113811600-113813600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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