Variant report

Variant	rs11741952
Chromosome Location	chr5:167315912-167315913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10061595	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10064131	0.95[EUR][1000 genomes]
rs13354056	0.87[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1862198	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28580528	0.96[EUR][1000 genomes]
rs56236411	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6880465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6887945	1.00[ASN][1000 genomes]
rs7443761	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7449290	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462511	chr5:167275087-167324809	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
2	nsv600254	chr5:167275087-167324809	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
3	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167266600-167326200	Weak transcription	HMEC	breast
2	chr5:167285600-167325600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:167305800-167323600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:167306400-167326600	Weak transcription	HSMM	muscle
5	chr5:167310600-167317600	Weak transcription	NHEK	skin
6	chr5:167310600-167323000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:167311200-167316400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:167312600-167325400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr5:167312800-167316000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:167312800-167316200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:167314000-167316600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:167315200-167316400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr5:167315200-167317000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:167315400-167316400	Enhancers	Liver	Liver
15	chr5:167315400-167316800	Enhancers	H9 Cell Line	embryonic stem cell
16	chr5:167315400-167316800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:167315400-167317200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:167315600-167316800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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