Variant report

Variant	rs11741960
Chromosome Location	chr5:111859595-111859596
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11750230	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134664	1.00[EUR][1000 genomes]
rs36002527	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv882715	chr5:111836278-111894491	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv882716	chr5:111848890-111894491	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111858000-111860600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:111858400-111860600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr5:111858600-111859600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:111858600-111859800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:111858600-111859800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr5:111858600-111860200	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr5:111858600-111860600	Enhancers	Adipose Nuclei	Adipose
8	chr5:111859000-111860200	Enhancers	Duodenum Mucosa	Duodenum
9	chr5:111859200-111860200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
10	chr5:111859400-111859800	Enhancers	Primary B cells from peripheral blood	blood
11	chr5:111859400-111860000	Enhancers	GM12878-XiMat	blood
12	chr5:111859400-111860400	Flanking Active TSS	Primary B cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links