Variant report

Variant	rs11742545
Chromosome Location	chr5:107141733-107141734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr5:107141483-107142404	HEK293-T-REx	kidney:	n/a	chr5:107142099-107142108 chr5:107142085-107142106

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107125029..107126613-chr5:107139861..107141985,2	MCF-7	breast:

Variant related genes	Relation type
RN7SKP122	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34110285	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv969928	chr5:107132237-107143800	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1022155	chr5:107138981-107149604	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11742545	FBXL17	cis	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107135400-107143000	Weak transcription	Right Atrium	heart
2	chr5:107138400-107144800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107139800-107142000	Weak transcription	NHDF-Ad	bronchial
4	chr5:107140200-107144200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:107140200-107144400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:107140400-107144000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:107140400-107144000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:107140400-107144200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:107140400-107148800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:107140600-107142800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr5:107140600-107144000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:107140800-107142400	Enhancers	Brain Germinal Matrix	brain
13	chr5:107140800-107142800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:107140800-107144400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:107140800-107145000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr5:107140800-107146600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:107141000-107142000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:107141000-107142800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:107141000-107143800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:107141200-107142200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:107141200-107144400	Weak transcription	Dnd41	blood
22	chr5:107141400-107144200	Weak transcription	Fetal Intestine Large	intestine
23	chr5:107141400-107146000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:107141400-107146600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr5:107141600-107142200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr5:107141600-107142200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr5:107141600-107142200	Enhancers	Fetal Muscle Trunk	muscle
28	chr5:107141600-107142800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr5:107141600-107143600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:107141600-107143600	Enhancers	Fetal Muscle Leg	muscle

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