Variant report

Variant	rs117430312
Chromosome Location	chr6:150336008-150336009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv970176	chr6:150319173-150343329	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv7375	chr6:150324114-150388625	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3344440	chr6:150324131-150388650	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv3323918	chr6:150327978-150392099	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv886766	chr6:150335407-150364009	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv886767	chr6:150335407-150400488	Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150330200-150336200	Weak transcription	Lung	lung
2	chr6:150335200-150336600	Bivalent Enhancer	Fetal Brain Male	brain
3	chr6:150335200-150340400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:150335400-150336800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr6:150335600-150336200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:150335600-150336600	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr6:150335800-150336200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:150335800-150336200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
9	chr6:150335800-150336200	Bivalent Enhancer	HUVEC	blood vessel
10	chr6:150335800-150336400	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
11	chr6:150335800-150336400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:150335800-150336400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:150335800-150336400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:150335800-150336400	Bivalent Enhancer	Liver	Liver
15	chr6:150335800-150336400	Bivalent Enhancer	Fetal Stomach	stomach
16	chr6:150335800-150336600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:150335800-150336600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:150335800-150336600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:150335800-150336600	Bivalent Enhancer	Adipose Nuclei	Adipose
20	chr6:150335800-150336800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
21	chr6:150335800-150336800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:150335800-150336800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr6:150335800-150336800	Bivalent Enhancer	Placenta	Placenta
24	chr6:150335800-150336800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
25	chr6:150335800-150337000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
26	chr6:150336000-150336200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:150336000-150336600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
28	chr6:150336000-150336600	Enhancers	Right Atrium	heart
29	chr6:150336000-150336600	Flanking Active TSS	HMEC	breast
30	chr6:150336000-150336800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
31	chr6:150336000-150336800	Bivalent Enhancer	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links