Variant report

Variant	rs11743118
Chromosome Location	chr5:68378929-68378930
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10454824	0.86[ASN][1000 genomes]
rs10940199	0.86[ASN][1000 genomes]
rs12519270	0.86[ASN][1000 genomes]
rs12522805	0.86[ASN][1000 genomes]
rs13185437	0.83[ASN][1000 genomes]
rs16898486	0.86[ASN][1000 genomes]
rs16898499	0.86[ASN][1000 genomes]
rs4976217	0.85[ASN][1000 genomes]
rs58151499	0.83[ASN][1000 genomes]
rs58575768	0.86[ASN][1000 genomes]
rs59734653	0.86[ASN][1000 genomes]
rs67722222	0.83[ASN][1000 genomes]
rs7718228	0.85[ASN][1000 genomes]
rs7719198	0.83[ASN][1000 genomes]
rs7719482	0.83[ASN][1000 genomes]
rs7733034	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018151	chr5:68377118-68667581	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv3391099	chr5:68377245-68400350	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68372200-68379200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr5:68375400-68379200	Weak transcription	Hela-S3	cervix
3	chr5:68375400-68379800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:68375600-68379000	Weak transcription	K562	blood
5	chr5:68375800-68379200	Weak transcription	HepG2	liver
6	chr5:68376000-68379200	Weak transcription	Fetal Intestine Large	intestine
7	chr5:68376000-68379200	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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