Variant report

Variant	rs11744663
Chromosome Location	chr5:57315635-57315636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10472030	0.83[ASN][1000 genomes]
rs11738952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11740997	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11741208	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11741819	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11742445	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11749915	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1349957	0.82[AMR][1000 genomes]
rs1378248	0.80[EUR][1000 genomes]
rs1454918	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17749982	0.80[EUR][1000 genomes]
rs56976559	0.82[AMR][1000 genomes]
rs60707702	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62359147	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62360185	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62360186	0.80[AMR][1000 genomes]
rs62360187	0.83[AMR][1000 genomes]
rs62360200	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62362089	0.91[AMR][1000 genomes]
rs62368373	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62368399	0.81[EUR][1000 genomes]
rs62368400	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62368401	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62368402	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62368403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62368405	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62368406	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62368407	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62368408	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62368409	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62368410	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62368411	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62368412	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62368413	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62368414	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62368415	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6884729	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6886096	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7713227	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7736576	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1792273	chr5:57214817-57320343	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1817904	chr5:57277522-57359476	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1829717	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1830976	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1837615	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1846984	chr5:57277522-57359476	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1850205	chr5:57277522-57359476	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv508357	chr5:57304472-57360187	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1020936	chr5:57309031-57333521	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	nsv1015769	chr5:57309031-57338357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
12	nsv598229	chr5:57309072-57345166	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1018119	chr5:57309406-57332632	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
14	nsv1019152	chr5:57310368-57332632	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
15	nsv1016557	chr5:57310368-57332943	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
16	nsv1021803	chr5:57310368-57333521	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
17	nsv4840	chr5:57311002-57352746	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv1804295	chr5:57312154-57333508	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
19	esv1808533	chr5:57312154-57333508	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
20	nsv1022237	chr5:57313235-57332542	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	nsv1023759	chr5:57314205-57333521	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	esv2763867	chr5:57314217-57360670	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57312800-57316200	Enhancers	Hela-S3	cervix
2	chr5:57312800-57317000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:57312800-57317200	Weak transcription	Placenta	Placenta
4	chr5:57314400-57316000	Weak transcription	Spleen	Spleen
5	chr5:57314400-57316200	Enhancers	Fetal Heart	heart
6	chr5:57314400-57316600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:57314600-57316400	Enhancers	HUVEC	blood vessel
8	chr5:57314800-57316200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:57314800-57316600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr5:57315200-57316000	Enhancers	Fetal Lung	lung
11	chr5:57315400-57315800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:57315400-57315800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:57315400-57315800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:57315400-57315800	Enhancers	Fetal Muscle Trunk	muscle
15	chr5:57315400-57316200	Enhancers	Adipose Nuclei	Adipose
16	chr5:57315400-57316200	Enhancers	Aorta	Aorta
17	chr5:57315400-57316200	Enhancers	Fetal Muscle Leg	muscle
18	chr5:57315400-57316200	Enhancers	Psoas Muscle	Psoas
19	chr5:57315400-57317600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr5:57315400-57317600	Enhancers	Left Ventricle	heart
21	chr5:57315400-57318400	Enhancers	Right Atrium	heart
22	chr5:57315600-57315800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:57315600-57315800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:57315600-57315800	Enhancers	Lung	lung
25	chr5:57315600-57315800	Enhancers	Ovary	ovary
26	chr5:57315600-57316000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr5:57315600-57316200	Enhancers	Right Ventricle	heart
28	chr5:57315600-57316200	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr5:57315600-57316200	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links