Variant report

Variant	rs11744760
Chromosome Location	chr5:58593226-58593227
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11746769	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17780836	0.86[EUR][1000 genomes]
rs17780860	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030117	chr5:58587672-58637179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58583600-58596400	Weak transcription	Esophagus	oesophagus
2	chr5:58584000-58596400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:58590200-58594800	Weak transcription	Gastric	stomach
4	chr5:58591200-58595600	Enhancers	Fetal Heart	heart
5	chr5:58591600-58596400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:58591600-58597600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:58592400-58593400	Flanking Active TSS	Liver	Liver
8	chr5:58592400-58593400	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr5:58592400-58593400	Flanking Active TSS	Duodenum Mucosa	Duodenum
10	chr5:58592400-58593400	Enhancers	Fetal Brain Male	brain
11	chr5:58592400-58593400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr5:58592400-58593400	Flanking Active TSS	HUVEC	blood vessel
13	chr5:58592400-58593600	Active TSS	Right Atrium	heart
14	chr5:58592400-58593800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr5:58592400-58593800	Enhancers	Fetal Intestine Large	intestine
16	chr5:58592400-58594000	Enhancers	Fetal Intestine Small	intestine
17	chr5:58592600-58593400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:58592600-58593400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:58592600-58593400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr5:58592600-58593400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:58592600-58593400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:58592600-58593400	Active TSS	Brain Angular Gyrus	brain
23	chr5:58592600-58593400	Active TSS	Brain Hippocampus Middle	brain
24	chr5:58592600-58593400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
25	chr5:58592600-58593600	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr5:58592600-58593600	Weak transcription	Small Intestine	intestine
27	chr5:58592800-58593400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr5:58592800-58593400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:58592800-58593400	Active TSS	Rectal Smooth Muscle	rectum
30	chr5:58592800-58593400	Active TSS	A549	lung
31	chr5:58592800-58593400	Active TSS	HMEC	breast
32	chr5:58592800-58593400	Active TSS	NHDF-Ad	bronchial
33	chr5:58592800-58593400	Active TSS	Osteobl	bone
34	chr5:58592800-58597800	Weak transcription	Left Ventricle	heart
35	chr5:58593000-58593400	Active TSS	Brain Cingulate Gyrus	brain
36	chr5:58593000-58593400	Weak transcription	Hela-S3	cervix
37	chr5:58593000-58593800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr5:58593000-58594000	Weak transcription	Psoas Muscle	Psoas
39	chr5:58593000-58594000	Enhancers	Stomach Mucosa	stomach
40	chr5:58593000-58594800	Weak transcription	Colonic Mucosa	Colon
41	chr5:58593000-58611200	Weak transcription	Right Ventricle	heart
42	chr5:58593200-58593400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr5:58593200-58593400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:58593200-58593400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr5:58593200-58593400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:58593200-58593400	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr5:58593200-58593400	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr5:58593200-58593400	Weak transcription	Brain Substantia Nigra	brain
49	chr5:58593200-58593400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr5:58593200-58593400	Flanking Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links