Variant report

Variant	rs11744829
Chromosome Location	chr5:81069401-81069402
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:81068024..81069829-chr5:81070706..81073662,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs462151	1.00[ASN][1000 genomes]
rs465059	1.00[ASN][1000 genomes]
rs61074987	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830361	chr5:80909811-81080409	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv830362	chr5:80990787-81184249	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1028322	chr5:81020723-81419278	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv598753	chr5:81031741-81491087	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv471018	chr5:81036805-81480371	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1033091	chr5:81039194-81159522	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv869102	chr5:81052386-81494502	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:81052800-81072200	Weak transcription	Psoas Muscle	Psoas
2	chr5:81065200-81083800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:81065400-81072200	Weak transcription	Aorta	Aorta
4	chr5:81065400-81072400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:81065600-81069600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:81065600-81069600	Weak transcription	Osteobl	bone
7	chr5:81065600-81074200	Weak transcription	HMEC	breast
8	chr5:81065600-81074200	Weak transcription	NHLF	lung
9	chr5:81067000-81070200	Enhancers	Stomach Smooth Muscle	stomach
10	chr5:81068600-81069600	Enhancers	Adipose Nuclei	Adipose
11	chr5:81068800-81070800	Enhancers	NHDF-Ad	bronchial
12	chr5:81068800-81071000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr5:81069000-81069800	Enhancers	Colon Smooth Muscle	Colon
14	chr5:81069000-81075800	Weak transcription	Left Ventricle	heart
15	chr5:81069200-81070000	Enhancers	A549	lung
16	chr5:81069200-81072200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:81069400-81069800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:81069400-81069800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:81069400-81070000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr5:81069400-81070200	Enhancers	K562	blood
21	chr5:81069400-81070400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:81069400-81074200	Weak transcription	Fetal Muscle Leg	muscle

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