Variant report

Variant	rs117459877
Chromosome Location	chr4:15556253-15556254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15555076..15558141-chr4:15558496..15561165,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv3364776	chr4:15556085-15556611	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15487400-15570400	Weak transcription	Psoas Muscle	Psoas
2	chr4:15495600-15559400	Weak transcription	HSMMtube	muscle
3	chr4:15502800-15577600	Weak transcription	Right Ventricle	heart
4	chr4:15508200-15556400	Weak transcription	Colonic Mucosa	Colon
5	chr4:15509200-15564400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:15512000-15580000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:15513000-15562400	Weak transcription	Primary B cells from cord blood	blood
8	chr4:15517800-15593600	Weak transcription	HUVEC	blood vessel
9	chr4:15520000-15572400	Weak transcription	Small Intestine	intestine
10	chr4:15526000-15558200	Weak transcription	Spleen	Spleen
11	chr4:15530200-15556600	Weak transcription	HSMM	muscle
12	chr4:15537200-15565000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:15537400-15621000	Weak transcription	Hela-S3	cervix
14	chr4:15539000-15570400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:15540200-15556800	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:15540200-15558200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:15540200-15558200	Weak transcription	Brain Angular Gyrus	brain
18	chr4:15540200-15558200	Weak transcription	Brain Anterior Caudate	brain
19	chr4:15540200-15559600	Weak transcription	Esophagus	oesophagus
20	chr4:15540200-15561600	Weak transcription	HMEC	breast
21	chr4:15540200-15561600	Weak transcription	NHEK	skin
22	chr4:15540200-15562600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr4:15540400-15563200	Weak transcription	Brain Substantia Nigra	brain
24	chr4:15540400-15565000	Weak transcription	NHDF-Ad	bronchial
25	chr4:15543800-15570600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr4:15544400-15562400	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr4:15544600-15563600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:15544800-15571600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:15544800-15576200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr4:15545000-15559400	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr4:15545000-15575600	Weak transcription	Fetal Heart	heart
32	chr4:15545400-15556600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:15546000-15589600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:15546200-15557000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr4:15546200-15564400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:15546200-15569400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr4:15546400-15572600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr4:15546800-15557000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr4:15546800-15569200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr4:15547400-15556400	Weak transcription	Fetal Lung	lung
41	chr4:15548000-15556800	Weak transcription	Brain Germinal Matrix	brain
42	chr4:15548400-15556600	Weak transcription	Left Ventricle	heart
43	chr4:15548600-15559200	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr4:15548800-15570800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr4:15549400-15565600	Weak transcription	Primary T cells from cord blood	blood
46	chr4:15549600-15564400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr4:15549600-15570800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr4:15550000-15617800	Weak transcription	Thymus	Thymus
49	chr4:15552200-15556800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr4:15553800-15557800	Strong transcription	Colon Smooth Muscle	Colon

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