Variant report

Variant	rs1174600
Chromosome Location	chr12:58735712-58735713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:58702936..58706179-chr12:58735514..58738404,3	MCF-7	breast:
2	chr12:58704331..58705154-chr12:58735410..58735918,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1148533	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1174389	0.86[EUR][1000 genomes]
rs1174594	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1185862	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1729796	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1729803	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2642539	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2642541	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv730	chr12:58698792-58759096	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv84	chr12:58720676-58746311	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv510602	chr12:58722449-58770942	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58731200-58736200	Weak transcription	Adipose Nuclei	Adipose
2	chr12:58731400-58736400	Weak transcription	HSMMtube	muscle
3	chr12:58731600-58746600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:58731800-58738200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:58732000-58736200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:58734200-58736200	Weak transcription	Fetal Muscle Leg	muscle
7	chr12:58734600-58737000	Enhancers	HUVEC	blood vessel
8	chr12:58735200-58736200	Enhancers	Primary hematopoietic stem cells	blood
9	chr12:58735200-58736600	Enhancers	Fetal Lung	lung
10	chr12:58735400-58736400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr12:58735400-58736800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr12:58735400-58736800	Enhancers	Fetal Stomach	stomach
13	chr12:58735400-58737200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr12:58735600-58735800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr12:58735600-58736000	Enhancers	Fetal Kidney	kidney
16	chr12:58735600-58736000	Enhancers	NH-A	brain
17	chr12:58735600-58736200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr12:58735600-58736400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr12:58735600-58736400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr12:58735600-58736400	Enhancers	Stomach Mucosa	stomach
21	chr12:58735600-58736400	Enhancers	NHLF	lung
22	chr12:58735600-58736600	Enhancers	A549	lung
23	chr12:58735600-58736800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr12:58735600-58737000	Enhancers	NHDF-Ad	bronchial
25	chr12:58735600-58738400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr12:58735600-58738400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links