Variant report

Variant	rs11746130
Chromosome Location	chr6:13134456-13134457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11249724	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11740121	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11740213	0.82[EUR][1000 genomes]
rs11740953	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11741030	0.81[EUR][1000 genomes]
rs11742350	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11742375	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11744428	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11744582	0.81[EUR][1000 genomes]
rs11745688	0.81[EUR][1000 genomes]
rs11748792	0.82[EUR][1000 genomes]
rs11949203	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11956078	0.81[EUR][1000 genomes]
rs11960298	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12109328	0.81[EUR][1000 genomes]
rs13171609	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13171921	0.80[EUR][1000 genomes]
rs13174480	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13179742	0.82[EUR][1000 genomes]
rs13187624	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17698422	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35076338	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35197594	0.81[EUR][1000 genomes]
rs56005965	0.85[EUR][1000 genomes]
rs56039468	0.81[EUR][1000 genomes]
rs60034484	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62405525	0.82[EUR][1000 genomes]
rs62405531	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62405532	0.83[EUR][1000 genomes]
rs62405547	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13115000-13135400	Weak transcription	Lung	lung
2	chr6:13121600-13135200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:13124400-13137800	Weak transcription	Pancreas	Pancrea
4	chr6:13128200-13139600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:13128400-13139000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:13132000-13138400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:13132600-13135200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:13132600-13135400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:13132600-13139200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:13132800-13137800	Weak transcription	Left Ventricle	heart
11	chr6:13132800-13153000	Weak transcription	Aorta	Aorta
12	chr6:13133200-13135400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:13133200-13136800	Weak transcription	Fetal Heart	heart
14	chr6:13133200-13138600	Weak transcription	Right Ventricle	heart
15	chr6:13133600-13137000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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