Variant report

Variant	rs11746365
Chromosome Location	chr5:124617602-124617603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11744285	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17521352	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17521472	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35734424	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59765583	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124614400-124631400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124617200-124617800	Enhancers	Duodenum Smooth Muscle	Duodenum
3	chr5:124617200-124617800	Enhancers	Fetal Heart	heart
4	chr5:124617600-124618800	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:124617600-124622000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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