Variant report

Variant	rs11746702
Chromosome Location	chr5:74139601-74139602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10062244	0.85[JPT][hapmap]
rs1043968	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10515191	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1104272	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1164692	0.81[YRI][hapmap]
rs11739122	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11741789	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11741825	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11742460	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11742621	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11742773	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11743655	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11746757	0.92[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11747965	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11749137	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11948188	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11955898	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12516674	0.81[YRI][hapmap]
rs1350097	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1447453	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs15694	0.94[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16872297	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16872299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872333	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16872346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16872347	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16872364	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17670897	0.85[JPT][hapmap]
rs17738111	0.85[JPT][hapmap]
rs17738565	0.85[JPT][hapmap]
rs17738645	0.85[JPT][hapmap]
rs1812122	0.81[ASN][1000 genomes]
rs1993370	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2044410	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2061162	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2084115	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2084116	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2084118	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2100033	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2166361	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2314936	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2314937	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34496480	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3733794	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3968877	0.82[JPT][hapmap]
rs4425487	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4594835	0.85[ASN][1000 genomes]
rs5020673	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55870102	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56068548	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56202905	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56276104	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56365996	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58367004	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59110717	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60663580	0.84[EUR][1000 genomes]
rs62366408	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62366414	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62366417	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366423	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62366424	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62366426	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62366455	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62366458	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62367762	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62367766	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6453075	0.89[CEU][hapmap];0.83[CHB][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6453077	0.84[CEU][hapmap];0.92[CHB][hapmap];0.95[YRI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6453083	0.81[YRI][hapmap]
rs6453084	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6453086	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6453087	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6859014	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6861730	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6863738	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6866082	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6873067	0.93[CEU][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6874094	0.95[CEU][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6874609	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6877116	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6877442	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6879781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6882499	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6883061	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6884843	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6885093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6885675	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6890815	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6897698	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6897904	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72764666	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73120619	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7708203	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7717223	0.85[ASN][1000 genomes]
rs7724292	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7728889	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9686657	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs11746702	NSA2	cis	Thyroid	GTEx
rs11746702	NSA2	cis	Artery Tibial	GTEx
rs11746702	NSA2	cis	lung	GTEx
rs11746702	NSA2	cis	Esophagus Mucosa	GTEx
rs11746702	NSA2	cis	Nerve Tibial	GTEx
rs11746702	TINP1	Cis_1M	lymphoblastoid	RTeQTL
rs11746702	NSA2	cis	Artery Aorta	GTEx
rs11746702	NSA2	cis	Heart Left Ventricle	GTEx
rs11746702	NSA2	cis	Muscle Skeletal	GTEx
rs11746702	NSA2	cis	Skin Sun Exposed Lower leg	GTEx
rs11746702	NSA2	cis	Esophagus Muscularis	GTEx
rs11746702	NSA2	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74069000-74153000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:74074800-74143400	Weak transcription	Primary B cells from cord blood	blood
3	chr5:74095800-74146000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:74097400-74147400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:74112800-74144400	Weak transcription	A549	lung
6	chr5:74112800-74144800	Weak transcription	Brain Anterior Caudate	brain
7	chr5:74116200-74146000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:74118400-74139800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr5:74127400-74148000	Weak transcription	Brain Angular Gyrus	brain
10	chr5:74130600-74147000	Weak transcription	HMEC	breast
11	chr5:74130800-74143800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:74131400-74140000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:74132400-74142600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr5:74132600-74146200	Weak transcription	NHEK	skin
15	chr5:74134800-74143600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr5:74134800-74144600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr5:74134800-74145000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:74134800-74146200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:74135000-74146600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr5:74135000-74147000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr5:74135200-74144400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:74135200-74144600	Weak transcription	Brain Hippocampus Middle	brain
23	chr5:74135200-74147400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr5:74135400-74146800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr5:74135400-74146800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr5:74135400-74147000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:74135600-74142600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:74135600-74145200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:74135600-74145800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:74136000-74144400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:74136200-74143600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:74138400-74141200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr5:74138400-74146200	Enhancers	HepG2	liver
34	chr5:74138600-74139800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr5:74138600-74140200	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr5:74138800-74140000	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr5:74138800-74140200	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr5:74138800-74140200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr5:74139200-74140200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr5:74139400-74140400	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr5:74139600-74140200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr5:74139600-74140200	Enhancers	H9 Cell Line	embryonic stem cell
43	chr5:74139600-74140200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr5:74139600-74141000	Enhancers	H1 Cell Line	embryonic stem cell

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