Variant report

Variant	rs11747178
Chromosome Location	chr5:92793427-92793428
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62367492	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92743600-92799200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:92760200-92798000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:92767400-92797000	Weak transcription	Fetal Brain Male	brain
4	chr5:92770000-92797800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:92778000-92797400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:92784000-92795000	Weak transcription	HSMM	muscle
7	chr5:92784600-92795400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:92788200-92798600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:92788400-92796200	Weak transcription	Fetal Kidney	kidney
10	chr5:92788400-92801200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:92788400-92814200	Weak transcription	Ovary	ovary
12	chr5:92792400-92793800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:92792600-92793800	Strong transcription	Fetal Lung	lung
14	chr5:92792600-92794800	Weak transcription	Brain Germinal Matrix	brain
15	chr5:92792600-92798800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:92793000-92793800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:92793000-92797400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:92793200-92794200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:92793400-92794000	Strong transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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