Variant report
| Variant | rs11747183 |
|---|---|
| Chromosome Location | chr5:178249593-178249594 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:178248233..178250497-chr5:178253238..178254765,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs11249580 | 0.94[ASN][1000 genomes] |
| rs11739648 | 0.93[ASN][1000 genomes] |
| rs11742308 | 0.82[ASN][1000 genomes] |
| rs11742485 | 0.85[ASN][1000 genomes] |
| rs11747490 | 0.94[ASN][1000 genomes] |
| rs11747908 | 0.88[ASN][1000 genomes] |
| rs11749468 | 0.91[ASN][1000 genomes] |
| rs11750068 | 0.94[ASN][1000 genomes] |
| rs11750817 | 0.89[ASN][1000 genomes] |
| rs12054952 | 0.88[ASN][1000 genomes] |
| rs12055318 | 0.88[ASN][1000 genomes] |
| rs12055319 | 0.88[ASN][1000 genomes] |
| rs12186812 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13163348 | 0.85[ASN][1000 genomes] |
| rs13163995 | 0.96[ASN][1000 genomes] |
| rs13171941 | 0.89[ASN][1000 genomes] |
| rs13181764 | 0.94[ASN][1000 genomes] |
| rs13183235 | 0.85[ASN][1000 genomes] |
| rs13183254 | 0.85[ASN][1000 genomes] |
| rs13187283 | 0.85[ASN][1000 genomes] |
| rs28786208 | 0.94[ASN][1000 genomes] |
| rs34742934 | 0.88[ASN][1000 genomes] |
| rs34744054 | 0.86[ASN][1000 genomes] |
| rs35070400 | 0.85[ASN][1000 genomes] |
| rs35429406 | 0.94[ASN][1000 genomes] |
| rs35714569 | 0.96[ASN][1000 genomes] |
| rs35721293 | 0.85[ASN][1000 genomes] |
| rs55641255 | 0.85[ASN][1000 genomes] |
| rs55773401 | 0.85[ASN][1000 genomes] |
| rs62392962 | 0.88[ASN][1000 genomes] |
| rs62392963 | 0.88[ASN][1000 genomes] |
| rs67875835 | 0.83[ASN][1000 genomes] |
| rs6876980 | 0.81[AMR][1000 genomes] |
| rs6896630 | 0.81[AMR][1000 genomes] |
| rs72814640 | 0.87[ASN][1000 genomes] |
| rs72814653 | 0.83[ASN][1000 genomes] |
| rs72814655 | 0.82[ASN][1000 genomes] |
| rs72814656 | 0.84[ASN][1000 genomes] |
| rs7443212 | 0.88[ASN][1000 genomes] |
| rs7446411 | 0.88[ASN][1000 genomes] |
| rs7708433 | 0.85[ASN][1000 genomes] |
| rs7722023 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1031206 | chr5:178149292-178283614 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv537973 | chr5:178149292-178283614 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv883218 | chr5:178219855-178349391 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:178236800-178255800 | Weak transcription | K562 | blood |
| 2 | chr5:178241200-178252400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
