Variant report

Variant	rs11747835
Chromosome Location	chr5:75718104-75718105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75700203..75702691-chr5:75717869..75720332,2	MCF-7	breast:
2	chr5:75717306..75720750-chr5:75722224..75725340,4	K562	blood:

Variant related genes	Relation type
ENSG00000145703	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17566680	1.00[YRI][hapmap]
rs17652073	1.00[ASW][hapmap]
rs6889168	1.00[ASW][hapmap]
rs72775766	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75701000-75721600	Weak transcription	Fetal Stomach	stomach
2	chr5:75703000-75731800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:75703600-75747000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:75707000-75727600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:75709800-75727200	Weak transcription	Primary B cells from cord blood	blood
6	chr5:75710200-75719000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:75710200-75720600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr5:75710200-75720800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr5:75710800-75719000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr5:75711000-75733600	Weak transcription	Thymus	Thymus
11	chr5:75712200-75720400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:75712400-75720600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:75714000-75720400	Weak transcription	Placenta	Placenta
14	chr5:75714800-75720400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:75715600-75718800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:75715600-75719800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:75715800-75718800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr5:75716000-75718200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr5:75716400-75719200	Enhancers	Liver	Liver
20	chr5:75716600-75718600	Enhancers	Stomach Mucosa	stomach
21	chr5:75716600-75718800	Enhancers	Duodenum Mucosa	Duodenum
22	chr5:75716600-75720400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr5:75716800-75718400	Enhancers	HepG2	liver
24	chr5:75716800-75718600	Enhancers	Fetal Intestine Small	intestine
25	chr5:75716800-75718800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr5:75717200-75718200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr5:75717200-75719400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:75717200-75720400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr5:75717400-75718400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr5:75717400-75720800	Weak transcription	Gastric	stomach
31	chr5:75717400-75722400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr5:75717600-75718600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr5:75717600-75718600	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr5:75717600-75718600	Enhancers	Fetal Intestine Large	intestine
35	chr5:75717600-75719000	Enhancers	Fetal Kidney	kidney
36	chr5:75717600-75720000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:75717800-75718600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr5:75717800-75718600	Enhancers	Small Intestine	intestine
39	chr5:75717800-75718800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr5:75717800-75718800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr5:75718000-75718200	Enhancers	Pancreas	Pancrea
42	chr5:75718000-75718400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr5:75718000-75718400	Strong transcription	Primary T cells from cord blood	blood
44	chr5:75718000-75718400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr5:75718000-75718600	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr5:75718000-75718600	Genic enhancers	Primary hematopoietic stem cells	blood
47	chr5:75718000-75718600	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr5:75718000-75718600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr5:75718000-75718800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
50	chr5:75718000-75719000	Enhancers	Fetal Lung	lung

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