Variant report

Variant	rs11751092
Chromosome Location	chr6:150618750-150618751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11753644	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11755841	0.82[EUR][1000 genomes]
rs2144400	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv519529	chr6:150612012-150618750	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150616200-150618800	Weak transcription	NH-A	brain
2	chr6:150617200-150620200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150617400-150618800	Enhancers	HMEC	breast
4	chr6:150617400-150619600	ZNF genes & repeats	K562	blood
5	chr6:150617800-150618800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:150617800-150618800	Enhancers	Osteobl	bone
7	chr6:150617800-150619200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
8	chr6:150617800-150619600	ZNF genes & repeats	Placenta	Placenta
9	chr6:150618000-150619600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:150618200-150618800	ZNF genes & repeats	NHEK	skin
11	chr6:150618200-150619200	Enhancers	Hela-S3	cervix
12	chr6:150618200-150619400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:150618200-150619600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
14	chr6:150618400-150619400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150618400-150619600	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr6:150618400-150619600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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