Variant report

Variant	rs11751520
Chromosome Location	chr6:70002111-70002112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11755273	1.00[CHB][hapmap]
rs16900558	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs17691995	1.00[ASW][hapmap];0.81[TSI][hapmap]
rs2296975	1.00[ASW][hapmap];0.81[TSI][hapmap]
rs56127974	0.81[EUR][1000 genomes]
rs73469401	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886139	chr6:69979989-70041922	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11751520	BAMBI	trans	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69991000-70003400	Weak transcription	Fetal Brain Female	brain
2	chr6:69991800-70002800	Weak transcription	Brain Angular Gyrus	brain
3	chr6:69994400-70015400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:70000000-70007600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:70000200-70009000	Weak transcription	Fetal Brain Male	brain
6	chr6:70000600-70007400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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