Variant report

Variant	rs11751645
Chromosome Location	chr6:139902376-139902377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139694161..139696891-chr6:139900179..139903169,2	MCF-7	breast:
2	chr6:139691841..139699576-chr6:139900868..139917289,34	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12660850	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664553	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17069030	0.94[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4896477	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs61117481	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775562	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9321729	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139892400-139903200	Weak transcription	Placenta	Placenta
2	chr6:139898800-139902400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:139899000-139907000	Weak transcription	K562	blood
4	chr6:139899600-139908800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:139900000-139904000	Weak transcription	NHLF	lung
6	chr6:139900000-139904400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:139900000-139907400	Weak transcription	Pancreas	Pancrea
8	chr6:139900000-139908800	Weak transcription	Fetal Lung	lung
9	chr6:139900200-139903600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:139900200-139903800	Weak transcription	NH-A	brain
11	chr6:139900200-139904000	Weak transcription	NHEK	skin
12	chr6:139900200-139904200	Weak transcription	HMEC	breast
13	chr6:139900200-139904600	Weak transcription	Fetal Heart	heart
14	chr6:139900200-139909000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:139900400-139903800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:139900400-139904000	Weak transcription	Osteobl	bone
17	chr6:139900400-139904200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:139900400-139904200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:139900400-139904200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:139900400-139904200	Weak transcription	HSMM	muscle
21	chr6:139900400-139904200	Weak transcription	NHDF-Ad	bronchial
22	chr6:139900400-139908800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:139900400-139908800	Weak transcription	Fetal Intestine Large	intestine
24	chr6:139900800-139902800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr6:139900800-139908800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:139900800-139919200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:139901000-139904000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:139901000-139904000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:139901400-139902600	Enhancers	Fetal Thymus	thymus
30	chr6:139901400-139902800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:139901400-139903000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:139901600-139902400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr6:139901600-139902400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr6:139901600-139902400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr6:139901600-139902600	Enhancers	Primary T cells from cord blood	blood
36	chr6:139901600-139902600	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr6:139901600-139902600	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr6:139901600-139902600	Flanking Active TSS	GM12878-XiMat	blood
39	chr6:139901600-139902800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:139901800-139902600	Enhancers	Fetal Kidney	kidney
41	chr6:139902000-139902400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:139902000-139902400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:139902000-139902600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr6:139902000-139902600	Enhancers	Primary T cells fromperipheralblood	blood
45	chr6:139902000-139902600	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr6:139902000-139902600	Enhancers	Brain Anterior Caudate	brain
47	chr6:139902200-139902400	Enhancers	Fetal Muscle Leg	muscle
48	chr6:139902200-139902600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:139902200-139903400	Weak transcription	Placenta Amnion	Placenta Amnion

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