Variant report

Variant	rs11751899
Chromosome Location	chr6:37493453-37493454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37483822..37487083-chr6:37490649..37493526,4	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11751929	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754640	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755065	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755117	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755189	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755804	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6457991	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6927590	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73730784	0.82[AFR][1000 genomes]
rs7767710	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470613	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37487600-37498200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:37489400-37502000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:37489600-37493600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:37489600-37502000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:37489800-37493800	Weak transcription	Fetal Thymus	thymus
6	chr6:37490400-37493800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:37490800-37502000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:37491000-37495400	Weak transcription	GM12878-XiMat	blood
9	chr6:37491000-37503000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:37491200-37498800	Enhancers	Fetal Brain Male	brain
11	chr6:37491400-37496400	Weak transcription	Primary B cells from cord blood	blood
12	chr6:37491800-37495600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:37492000-37493600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:37492000-37493600	Enhancers	NH-A	brain
15	chr6:37492400-37493600	Enhancers	Fetal Brain Female	brain
16	chr6:37492400-37495200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr6:37492600-37493600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:37492600-37493600	Enhancers	Hela-S3	cervix
19	chr6:37492600-37493600	Enhancers	HUVEC	blood vessel
20	chr6:37492800-37493600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:37492800-37493600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:37492800-37493800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:37493000-37493600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr6:37493000-37493600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:37493000-37494000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr6:37493000-37495200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:37493200-37493600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr6:37493200-37493600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:37493200-37493800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:37493200-37495600	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr6:37493400-37493600	Enhancers	Brain Germinal Matrix	brain

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