Variant report
| Variant | rs11751934 |
|---|---|
| Chromosome Location | chr6:30365915-30365916 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:30325083..30325836-chr6:30364496..30366117,4 | MCF-7 | breast: | |
| 2 | chr6:30364759..30366950-chr6:30511934..30514120,2 | K562 | blood: | |
| 3 | chr6:30311806..30314300-chr6:30365522..30367404,2 | MCF-7 | breast: | |
| 4 | chr6:30365835..30367993-chr6:30369387..30370931,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000241370 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs11751267 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11752050 | 1.00[EUR][1000 genomes] |
| rs11752535 | 1.00[EUR][1000 genomes] |
| rs11755130 | 1.00[EUR][1000 genomes] |
| rs28581793 | 1.00[EUR][1000 genomes] |
| rs7745668 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7745703 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025667 | chr6:30292845-30638066 | Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 825 gene(s) | inside rSNPs | diseases |
| 2 | nsv969293 | chr6:30348821-30368580 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
