Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140238724..140241294-chr6:140241796..140244314,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11155093	0.82[EUR][1000 genomes]
rs11155094	0.82[EUR][1000 genomes]
rs11754775	0.81[EUR][1000 genomes]
rs12193363	0.82[EUR][1000 genomes]
rs12193742	0.81[EUR][1000 genomes]
rs12194624	0.82[EUR][1000 genomes]
rs12194665	0.82[EUR][1000 genomes]
rs12197457	0.91[ASN][1000 genomes]
rs12198042	0.82[EUR][1000 genomes]
rs12198639	0.82[EUR][1000 genomes]
rs12204229	0.82[EUR][1000 genomes]
rs12214000	0.82[EUR][1000 genomes]
rs12214369	0.83[ASW][hapmap];0.85[TSI][hapmap];0.87[YRI][hapmap]
rs12214414	0.81[EUR][1000 genomes]
rs12215417	0.81[EUR][1000 genomes]
rs12216315	0.81[EUR][1000 genomes]
rs2024678	0.81[EUR][1000 genomes]
rs2064502	0.81[EUR][1000 genomes]
rs72986764	0.82[EUR][1000 genomes]
rs9495596	0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140227000-140247600	Weak transcription	Small Intestine	intestine
2	chr6:140227600-140239200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:140228000-140239200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:140235000-140239200	Weak transcription	K562	blood
5	chr6:140238600-140239800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:140238600-140242400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:140238600-140242400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search: