Variant report

Variant	rs11753590
Chromosome Location	chr6:26313666-26313667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26310563..26314155-chr6:26536895..26540158,5	K562	blood:
2	chr6:26312202..26314079-chr6:27098423..27101223,2	K562	blood:
3	chr6:26311753..26313702-chr6:27099614..27101223,2	K562	blood:
4	chr6:26311713..26314020-chr6:26575069..26576687,2	K562	blood:
5	chr6:26311313..26315619-chr6:26320947..26324621,7	MCF-7	breast:
6	chr6:26311888..26313788-chr6:26552571..26554289,2	MCF-7	breast:
7	chr6:26311801..26313925-chr6:26321423..26324467,3	MCF-7	breast:
8	chr6:26311628..26314659-chr6:26531812..26534780,3	K562	blood:
9	chr6:26311604..26315046-chr6:26315358..26318350,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000220875	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000196787	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10484438	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11751646	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11751978	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752014	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11752120	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11752202	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11754701	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755996	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11756569	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11758318	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16891520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16891523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891529	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883214	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2393594	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34581160	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35190365	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35709300	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4365922	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4631273	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59315883	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6899837	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6914596	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73397342	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73399344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399373	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73399386	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
6	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
7	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
8	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
9	nsv601173	chr6:26239404-26322524	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	184 gene(s)	inside rSNPs	diseases
10	nsv482729	chr6:26291011-26470898	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
11	nsv525347	chr6:26313348-26322985	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26309400-26314200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:26310600-26314400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:26310600-26314400	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:26310800-26314200	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr6:26310800-26314200	Active TSS	Fetal Muscle Trunk	muscle
6	chr6:26310800-26314400	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr6:26310800-26314600	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:26311000-26314200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:26311000-26314400	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr6:26311000-26314400	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:26311000-26314400	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:26311000-26314400	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr6:26311000-26314400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:26311000-26314400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:26311000-26314400	Active TSS	Brain Anterior Caudate	brain
16	chr6:26311000-26314600	Active TSS	H9 Cell Line	embryonic stem cell
17	chr6:26311200-26314000	Active TSS	Brain Cingulate Gyrus	brain
18	chr6:26311200-26314000	Active TSS	Rectal Smooth Muscle	rectum
19	chr6:26311200-26314200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:26311200-26314200	Active TSS	Ovary	ovary
21	chr6:26311200-26314400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:26311200-26314400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:26311200-26314400	Active TSS	A549	lung
24	chr6:26311200-26314600	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr6:26311200-26314600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:26311200-26314600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:26311200-26314600	Active TSS	Brain Angular Gyrus	brain
28	chr6:26311400-26314000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:26311400-26314000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:26311400-26314000	Active TSS	NH-A	brain
31	chr6:26311400-26314200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:26311400-26314200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:26311400-26314200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:26311400-26314400	Active TSS	NHEK	skin
35	chr6:26311400-26314400	Active TSS	NHLF	lung
36	chr6:26311400-26314600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:26311400-26314600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:26311400-26314600	Active TSS	K562	blood
39	chr6:26311600-26314000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:26311600-26314000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:26311600-26314000	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr6:26311600-26314000	Active TSS	Stomach Smooth Muscle	stomach
43	chr6:26311600-26314000	Active TSS	HSMMtube	muscle
44	chr6:26311600-26314200	Active TSS	Brain Hippocampus Middle	brain
45	chr6:26311600-26314200	Active TSS	Right Atrium	heart
46	chr6:26311600-26314400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:26311600-26314600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:26311800-26313800	Active TSS	Esophagus	oesophagus
49	chr6:26311800-26314000	Active TSS	Colon Smooth Muscle	Colon
50	chr6:26311800-26314200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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