Variant report

Variant	rs11754153
Chromosome Location	chr6:33592211-33592212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33589679..33592438-chr6:33605298..33608151,2	MCF-7	breast:
2	chr6:33591444..33593471-chr6:33595633..33598243,2	MCF-7	breast:
3	chr17:56736454..56738602-chr6:33589465..33592275,2	MCF-7	breast:
4	chr6:33238566..33241234-chr6:33590269..33592399,2	K562	blood:
5	chr6:33586212..33588848-chr6:33589323..33592935,3	K562	blood:
6	chr6:33590320..33593181-chr6:33667665..33670096,2	MCF-7	breast:
7	chr6:33587647..33590168-chr6:33590912..33595599,6	MCF-7	breast:
8	chr6:33587667..33592228-chr6:33677016..33679936,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000202077	Chromatin interaction
ENSG00000231500	Chromatin interaction
ENSG00000223501	Chromatin interaction
ENSG00000096433	Chromatin interaction
ENSG00000137288	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11760139	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748080	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41271247	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55694657	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59929559	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902606	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913427	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
3	nsv5250	chr6:33565017-33598370	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
4	esv1817557	chr6:33584788-33614127	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv1813933	chr6:33587443-33614127	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33590200-33592600	Flanking Active TSS	Duodenum Mucosa	Duodenum
2	chr6:33590200-33592600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
3	chr6:33590200-33592600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
4	chr6:33590200-33593000	Enhancers	Fetal Lung	lung
5	chr6:33590200-33600600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:33590400-33592400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:33590400-33593000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:33590400-33600200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:33590400-33600400	Weak transcription	Psoas Muscle	Psoas
10	chr6:33590600-33592600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:33590600-33592600	Enhancers	HUVEC	blood vessel
12	chr6:33590600-33593200	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr6:33590800-33592600	Enhancers	Pancreas	Pancrea
14	chr6:33590800-33595400	Weak transcription	HSMMtube	muscle
15	chr6:33591000-33592400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
16	chr6:33591000-33592400	Strong transcription	K562	blood
17	chr6:33591000-33592600	Genic enhancers	Dnd41	blood
18	chr6:33591000-33595000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:33591000-33595200	Weak transcription	HSMM	muscle
20	chr6:33591000-33595400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:33591000-33595600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:33591000-33595600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:33591000-33599000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:33591000-33600000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:33591000-33600200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:33591000-33600600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:33591000-33600600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:33591000-33600600	Weak transcription	Osteobl	bone
29	chr6:33591200-33593000	Genic enhancers	Lung	lung
30	chr6:33591200-33594200	Genic enhancers	Spleen	Spleen
31	chr6:33591200-33600800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:33591400-33592400	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr6:33591400-33592400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
34	chr6:33591400-33592400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:33591400-33592400	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr6:33591400-33592400	Transcr. at gene 5' and 3'	Hela-S3	cervix
37	chr6:33591400-33592600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr6:33591400-33592800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:33591400-33592800	Strong transcription	Thymus	Thymus
40	chr6:33591400-33595600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:33591400-33595600	Weak transcription	Right Atrium	heart
42	chr6:33591600-33592400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:33591600-33592600	Genic enhancers	Primary T cells fromperipheralblood	blood
44	chr6:33591600-33592600	Genic enhancers	HepG2	liver
45	chr6:33591600-33592800	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr6:33591600-33592800	Genic enhancers	NHEK	skin
47	chr6:33591600-33593000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:33591600-33594400	Genic enhancers	HMEC	breast
49	chr6:33591600-33595400	Weak transcription	Adipose Nuclei	Adipose
50	chr6:33591600-33595400	Weak transcription	Gastric	stomach

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