Variant report

Variant	rs11754335
Chromosome Location	chr6:80713014-80713015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:80712940-80713109	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80656144..80658220-chr6:80712686..80714230,2	K562	blood:

Variant related genes	Relation type
TTK	TF binding region
ENSG00000118402	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13195743	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80703800-80713200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:80712200-80713200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:80712600-80713200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:80712600-80713200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:80712600-80713200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:80712600-80713200	Enhancers	Fetal Thymus	thymus
7	chr6:80712600-80713400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:80712600-80713400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:80712600-80713600	Enhancers	Esophagus	oesophagus
10	chr6:80712600-80713600	Enhancers	Small Intestine	intestine
11	chr6:80712600-80714000	Flanking Active TSS	Dnd41	blood
12	chr6:80712600-80714600	Active TSS	Rectal Smooth Muscle	rectum
13	chr6:80712800-80713200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr6:80713000-80713200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:80713000-80713200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:80713000-80713200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:80713000-80713200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:80713000-80713200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:80713000-80713200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:80713000-80713200	Enhancers	Primary T cells from cord blood	blood
21	chr6:80713000-80713200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:80713000-80713200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr6:80713000-80713200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:80713000-80713200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:80713000-80713200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:80713000-80713200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:80713000-80713200	Enhancers	Brain Anterior Caudate	brain
28	chr6:80713000-80713200	Enhancers	Brain Hippocampus Middle	brain
29	chr6:80713000-80713200	Enhancers	Fetal Brain Male	brain
30	chr6:80713000-80713200	Enhancers	Fetal Heart	heart
31	chr6:80713000-80713200	Enhancers	Stomach Smooth Muscle	stomach
32	chr6:80713000-80713200	Enhancers	NHDF-Ad	bronchial
33	chr6:80713000-80713200	Enhancers	NHEK	skin
34	chr6:80713000-80713200	Enhancers	NHLF	lung
35	chr6:80713000-80713400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr6:80713000-80713400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr6:80713000-80713400	Flanking Active TSS	Thymus	Thymus
38	chr6:80713000-80713400	Flanking Active TSS	HepG2	liver
39	chr6:80713000-80713600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:80713000-80713600	Enhancers	Stomach Mucosa	stomach
41	chr6:80713000-80714000	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr6:80713000-80714600	Active TSS	Brain Angular Gyrus	brain

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