Variant report

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:44225090..44228269-chr6:44308012..44310883,3	K562	blood:
2	chr6:44238398..44239903-chr6:44307869..44309407,2	MCF-7	breast:
3	chr6:44247321..44249117-chr6:44305925..44308606,2	K562	blood:
4	chr6:44062217..44064228-chr6:44306668..44309028,2	K562	blood:
5	chr6:44237156..44239963-chr6:44308095..44310360,2	MCF-7	breast:
6	chr6:44306430..44308872-chr6:44310895..44313358,2	K562	blood:
7	chr6:44229471..44232092-chr6:44306709..44308642,2	K562	blood:
8	chr6:44233695..44236268-chr6:44306586..44308563,3	K562	blood:
9	chr6:44236483..44238229-chr6:44307349..44309648,2	K562	blood:
10	chr6:44307648..44309372-chr6:44321890..44323452,2	K562	blood:
11	chr6:44307682..44310665-chr6:44355077..44358723,3	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10948134	0.96[EUR][1000 genomes]
rs13220856	0.96[EUR][1000 genomes]
rs1571774	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1609726	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16871772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1971329	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2221224	0.94[EUR][1000 genomes]
rs2396239	0.88[EUR][1000 genomes]
rs4714782	0.98[EUR][1000 genomes]
rs4714783	0.94[EUR][1000 genomes]
rs4714784	0.95[EUR][1000 genomes]
rs4714785	0.95[EUR][1000 genomes]
rs6911823	0.94[EUR][1000 genomes]
rs6935417	0.95[EUR][1000 genomes]
rs7738562	0.96[EUR][1000 genomes]
rs7760813	0.98[EUR][1000 genomes]
rs7772720	0.94[EUR][1000 genomes]
rs883193	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs883194	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9349282	0.94[EUR][1000 genomes]
rs9381313	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9381315	0.82[EUR][1000 genomes]
rs9472263	0.96[EUR][1000 genomes]
rs950230	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44302600-44309600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:44305400-44310400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:44306200-44309200	Weak transcription	Brain Germinal Matrix	brain
4	chr6:44306800-44309200	Weak transcription	K562	blood
5	chr6:44307800-44309800	Weak transcription	Liver	Liver

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