Variant report

Variant	rs11755662
Chromosome Location	chr6:27101504-27101505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:334)
CpG islands
(count:0)
Chromatin interactive
region (count:118)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:334 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr6:27099575-27101836	K562	blood:	n/a	chr6:27100770-27100781 chr6:27100767-27100782 chr6:27100769-27100786 chr6:27100771-27100780 chr6:27100772-27100779 chr6:27100772-27100783 chr6:27100772-27100779 chr6:27100772-27100779 chr6:27100769-27100786 chr6:27100771-27100779 chr6:27099754-27099763 chr6:27100772-27100783 chr6:27100772-27100783 chr6:27100768-27100782 chr6:27100880-27100892 chr6:27099714-27099721
2	RDBP	chr6:27100223-27101806	K562	blood:	n/a	n/a
3	POLR2A	chr6:27101478-27101838	A549	lung:	n/a	n/a
4	POLR2A	chr6:27098755-27102444	GM12892	blood:	n/a	n/a
5	POU2F2	chr6:27099488-27101967	GM12878	blood:	n/a	chr6:27100612-27100624 chr6:27100613-27100621 chr6:27100613-27100622 chr6:27099862-27099873 chr6:27100614-27100621 chr6:27100606-27100627 chr6:27100610-27100625 chr6:27100606-27100628 chr6:27100611-27100624 chr6:27100613-27100623 chr6:27100608-27100626 chr6:27100611-27100622 chr6:27100613-27100623 chr6:27100612-27100622 chr6:27100610-27100624
6	POLR2A	chr6:27101450-27101901	ECC-1	luminal epithelium:	n/a	n/a
7	SPI1	chr6:27101123-27101826	HL-60	blood:	n/a	n/a
8	POLR2A	chr6:27099471-27102442	MCF10A-Er-Src	breast:	n/a	n/a
9	SIN3AK20	chr6:27099415-27102067	HCT-116	colon:	n/a	n/a
10	CHD1	chr6:27099141-27102382	H1-hESC	embryonic stem cell:	n/a	n/a
11	MAX	chr6:27101374-27102054	SK-N-SH	brain:	n/a	n/a
12	SMC3	chr6:27099990-27101932	GM12878	blood:	n/a	n/a
13	CEBPB	chr6:27099653-27102745	Hela-S3	cervix:	n/a	chr6:27102346-27102357
14	SIN3AK20	chr6:27100614-27101625	A549	lung:	n/a	n/a
15	TAF7	chr6:27100284-27101918	H1-hESC	embryonic stem cell:	n/a	n/a
16	TCF12	chr6:27099094-27102549	A549	lung:	n/a	n/a
17	YY1	chr6:27101478-27101880	GM12878	blood:	n/a	n/a
18	TAF1	chr6:27101470-27101948	SK-N-SH	brain:	n/a	n/a
19	SMARCB1	chr6:27099251-27101942	Hela-S3	cervix:	n/a	n/a
20	TAF1	chr6:27101465-27101851	A549	lung:	n/a	n/a
21	POLR2A	chr6:27099465-27101926	HepG2	liver:	n/a	n/a
22	POLR2A	chr6:27099422-27101795	SK-N-MC	brain:	n/a	n/a
23	EGR1	chr6:27100663-27102321	K562	blood:	n/a	n/a
24	POLR2A	chr6:27099502-27101973	PFSK-1	brain:	n/a	n/a
25	CEBPB	chr6:27101113-27102712	HCT-116	colon:	n/a	chr6:27102346-27102357
26	RUNX3	chr6:27099111-27102037	GM12878	blood:	n/a	chr6:27100819-27100828
27	ETS1	chr6:27101421-27101897	GM12878	blood:	n/a	n/a
28	POLR2A	chr6:27099203-27101989	U87	brain:	n/a	n/a
29	MAX	chr6:27099445-27102587	A549	lung:	n/a	chr6:27100610-27100619
30	NR2C2	chr6:27099728-27101553	HepG2	liver:	n/a	n/a
31	POLR2A	chr6:27098864-27102290	GM19099	blood:	n/a	n/a
32	SP4	chr6:27099489-27102080	H1-hESC	embryonic stem cell:	n/a	chr6:27099774-27099785
33	ETS1	chr6:27101446-27101915	K562	blood:	n/a	n/a
34	POLR2A	chr6:27099592-27102057	HepG2	liver:	n/a	n/a
35	BHLHE40	chr6:27100292-27102316	GM12878	blood:	n/a	n/a
36	MAX	chr6:27098859-27101965	Hela-S3	cervix:	n/a	chr6:27100610-27100619
37	POLR2A	chr6:27098707-27102455	GM12878	blood:	n/a	n/a
38	SIN3A	chr6:27099465-27102013	GM12878	blood:	n/a	n/a
39	PML	chr6:27099393-27102534	K562	blood:	n/a	n/a
40	YY1	chr6:27101497-27101846	GM12892	blood:	n/a	n/a
41	TAF1	chr6:27101488-27101919	H1-hESC	embryonic stem cell:	n/a	n/a
42	POLR2A	chr6:27099312-27102055	MCF-7	breast:	n/a	n/a
43	POLR2A	chr6:27099098-27102095	HL-60	blood:	n/a	n/a
44	POLR2A	chr6:27098802-27102692	K562	blood:	n/a	n/a
45	BACH1	chr6:27101272-27102416	K562	blood:	n/a	n/a
46	POLR2A	chr6:27099492-27101916	HCT-116	colon:	n/a	n/a
47	POLR2A	chr6:27098515-27102749	H1-hESC	embryonic stem cell:	n/a	n/a
48	TRIM28	chr6:27100684-27102086	K562	blood:	n/a	n/a
49	POLR2A	chr6:27098735-27102399	GM12878	blood:	n/a	n/a
50	POLR2A	chr6:27099245-27101942	GM19193	blood:	n/a	n/a

No data

(count:118 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr6:26283553..26287733-chr6:27097522..27103890,12	K562	blood:
2	chr6:27100619..27103482-chr6:27790924..27794224,3	MCF-7	breast:
3	chr22:19466508..19469861-chr6:27098397..27102298,3	K562	blood:
4	chr6:26156157..26159561-chr6:27098059..27103137,9	MCF-7	breast:
5	chr16:50775848..50776513-chr6:27100740..27101506,2	Hela-S3	cervix:
6	chr6:26181582..26185463-chr6:27101423..27104248,3	MCF-7	breast:
7	chr6:27096288..27105112-chr6:27855525..27865082,32	K562	blood:
8	chr1:17231243..17231999-chr6:27100768..27101644,2	MCF-7	breast:
9	chr6:26187507..26190261-chr6:27099153..27102365,6	MCF-7	breast:
10	chr13:60970490..60971034-chr6:27100970..27101709,2	Hela-S3	cervix:
11	chr6:26214809..26219329-chr6:27098036..27102129,6	MCF-7	breast:
12	chr17:40828526..40829327-chr6:27101379..27102040,2	Hela-S3	cervix:
13	chr17:56707767..56709284-chr6:27100239..27101746,2	MCF-7	breast:
14	chr6:27094403..27106138-chr6:27772392..27783072,46	MCF-7	breast:
15	chr6:26210558..26220469-chr6:27093552..27103796,28	K562	blood:
16	chr6:27100578..27101684-chr6:27114629..27115627,5	Hela-S3	cervix:
17	chr3:64006479..64009154-chr6:27099911..27101593,2	MCF-7	breast:
18	chr6:26519250..26523737-chr6:27099178..27105777,8	K562	blood:
19	chr6:26233448..26235462-chr6:27099272..27101626,2	MCF-7	breast:
20	chr18:48405247..48405856-chr6:27101016..27101922,2	Hela-S3	cervix:
21	chr6:26989531..26991995-chr6:27101331..27103055,2	K562	blood:
22	chr6:26155271..26161648-chr6:27095163..27104437,21	K562	blood:
23	chr6:26030558..26034410-chr6:27100755..27103505,3	MCF-7	breast:
24	chr4:37479421..37482110-chr6:27101320..27103715,2	MCF-7	breast:
25	chr6:26023233..26029617-chr6:27098032..27102736,8	MCF-7	breast:
26	chr6:26121882..26125935-chr6:27097712..27102367,10	MCF-7	breast:
27	chr6:26196890..26209578-chr6:27096615..27108451,46	K562	blood:
28	chr17:48938142..48939877-chr6:27101251..27103449,2	MCF-7	breast:
29	chr6:27094943..27118570-chr6:27854106..27868030,101	K562	blood:
30	chr6:27099529..27101818-chr6:27857109..27860986,3	MCF-7	breast:
31	chr6:27100852..27101558-chr6:27839278..27840055,2	NB4	blood:
32	chr15:72668298..72668874-chr6:27101402..27102136,2	Hela-S3	cervix:
33	chr6:26613084..26615086-chr6:27100587..27102227,2	K562	blood:
34	chr6:26986141..26989315-chr6:27099693..27102722,3	K562	blood:
35	chr6:27098287..27103463-chr6:27796109..27800380,7	K562	blood:
36	chr16:31884950..31886788-chr6:27100904..27102927,2	MCF-7	breast:
37	chr6:26248241..26251766-chr6:27097726..27103043,5	MCF-7	breast:
38	chr20:48429364..48430104-chr6:27101035..27102013,2	Hela-S3	cervix:
39	chr1:53163958..53164880-chr6:27100620..27101614,2	Hela-S3	cervix:
40	chr6:27098129..27102708-chr6:27857691..27863156,15	MCF-7	breast:
41	chr6:26231234..26236589-chr6:27099738..27104932,8	K562	blood:
42	chr18:12376373..12377442-chr6:27100665..27101926,4	Hela-S3	cervix:
43	chr3:179367825..179369466-chr6:27100717..27102365,2	MCF-7	breast:
44	chr6:26270978..26274693-chr6:27098356..27103484,7	MCF-7	breast:
45	chr6:26026115..26036040-chr6:27097153..27104835,26	K562	blood:
46	chr6:26187257..26192079-chr6:27098954..27103250,7	MCF-7	breast:
47	chr6:26249691..26251451-chr6:27101097..27103311,2	MCF-7	breast:
48	chr6:26250350..26252961-chr6:27100694..27103484,2	K562	blood:
49	chr6:26024161..26035534-chr6:27093020..27104638,25	K562	blood:
50	chr6:27084225..27086448-chr6:27100867..27103519,2	MCF-7	breast:

No data

Variant related genes	Relation type
HIST1H2BJ	TF binding region
ENSG00000188987	Chromatin interaction
ENSG00000182572	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000170619	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000243977	Chromatin interaction
ENSG00000152683	Chromatin interaction
ENSG00000197697	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000113407	Chromatin interaction
ENSG00000198374	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000112812	Chromatin interaction
ENSG00000224843	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000001460	Chromatin interaction
ENSG00000260339	Chromatin interaction
ENSG00000213614	Chromatin interaction
ENSG00000272716	Chromatin interaction
ENSG00000217275	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000179262	Chromatin interaction
ENSG00000168242	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000001461	Chromatin interaction
ENSG00000185238	Chromatin interaction
ENSG00000140264	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000197818	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000272426	Chromatin interaction
ENSG00000238648	Chromatin interaction
ENSG00000075624	Chromatin interaction
ENSG00000162377	Chromatin interaction
ENSG00000217646	Chromatin interaction
ENSG00000093009	Chromatin interaction
ENSG00000218281	Chromatin interaction
ENSG00000216331	Chromatin interaction
ENSG00000147586	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000197914	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000177954	Chromatin interaction
ENSG00000256018	Chromatin interaction
ENSG00000219770	Chromatin interaction
ENSG00000164951	Chromatin interaction
ENSG00000141385	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000185947	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000068137	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000108270	Chromatin interaction
ENSG00000196966	Chromatin interaction
ENSG00000167807	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000264947	Chromatin interaction
ENSG00000124575	Chromatin interaction
ENSG00000198518	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000113369	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000070010	Chromatin interaction
ENSG00000082212	Chromatin interaction
ENSG00000238610	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000228022	Chromatin interaction
ENSG00000238621	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000083799	Chromatin interaction
ENSG00000256316	Chromatin interaction
ENSG00000119335	Chromatin interaction
ENSG00000271071	Chromatin interaction
ENSG00000158406	Chromatin interaction
ENSG00000184897	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000163636	Chromatin interaction
ENSG00000267673	Chromatin interaction
ENSG00000083544	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000218690	Chromatin interaction
ENSG00000197459	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000116761	Chromatin interaction
ENSG00000260729	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11968996	1.00[JPT][hapmap]
rs11969113	1.00[JPT][hapmap]
rs12664426	1.00[JPT][hapmap]
rs13211166	1.00[JPT][hapmap]
rs16897515	1.00[JPT][hapmap]
rs2893910	1.00[JPT][hapmap]
rs3800316	1.00[JPT][hapmap]
rs3800318	1.00[JPT][hapmap]
rs6921711	1.00[JPT][hapmap]
rs6938200	1.00[JPT][hapmap]
rs7741445	1.00[JPT][hapmap]
rs7746199	1.00[JPT][hapmap]
rs7760931	1.00[JPT][hapmap]
rs7765489	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1029124	chr6:26825468-27109774	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	244 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27098000-27102200	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr6:27098200-27101800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:27098400-27101600	Active TSS	GM12878-XiMat	blood
4	chr6:27098400-27102400	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:27098400-27102400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:27098400-27102800	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:27098600-27102000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:27098600-27102200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:27098600-27102400	Active TSS	H1 Cell Line	embryonic stem cell
10	chr6:27098600-27102400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:27098800-27101600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:27098800-27101800	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:27098800-27101800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:27098800-27102000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:27098800-27102000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:27098800-27102200	Active TSS	Brain Germinal Matrix	brain
17	chr6:27098800-27102400	Active TSS	H9 Cell Line	embryonic stem cell
18	chr6:27098800-27102400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:27098800-27102400	Active TSS	Fetal Kidney	kidney
20	chr6:27098800-27102400	Active TSS	NHLF	lung
21	chr6:27098800-27102800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:27098800-27102800	Active TSS	A549	lung
23	chr6:27098800-27104600	Active TSS	K562	blood
24	chr6:27099000-27101600	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr6:27099000-27101600	Active TSS	Fetal Intestine Large	intestine
26	chr6:27099000-27101600	Active TSS	Psoas Muscle	Psoas
27	chr6:27099000-27101600	Active TSS	HSMMtube	muscle
28	chr6:27099000-27101800	Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr6:27099000-27101800	Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr6:27099000-27102000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:27099000-27102000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:27099000-27102000	Active TSS	Right Ventricle	heart
33	chr6:27099000-27102200	Active TSS	NHDF-Ad	bronchial
34	chr6:27099000-27102400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr6:27099000-27102400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:27099000-27102400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr6:27099200-27101600	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr6:27099200-27101600	Active TSS	Fetal Heart	heart
39	chr6:27099200-27101600	Active TSS	Fetal Lung	lung
40	chr6:27099200-27101600	Active TSS	Placenta Amnion	Placenta Amnion
41	chr6:27099200-27101800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:27099200-27101800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:27099200-27101800	Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr6:27099200-27101800	Active TSS	Sigmoid Colon	Sigmoid Colon
45	chr6:27099200-27101800	Active TSS	Dnd41	blood
46	chr6:27099200-27101800	Active TSS	Hela-S3	cervix
47	chr6:27099200-27102000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:27099200-27102000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:27099200-27102000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
50	chr6:27099200-27102000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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