Variant report

Variant	rs11755824
Chromosome Location	chr6:38101313-38101314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:38100684..38103465-chr6:38103538..38107352,3	K562	blood:
2	chr6:38099507..38102377-chr6:38107497..38109625,2	MCF-7	breast:
3	chr6:38100780..38103465-chr6:38103538..38106018,2	K562	blood:
4	chr6:38100724..38102383-chr6:38103789..38105577,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11751393	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752354	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11753390	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11753809	0.85[ASN][1000 genomes]
rs11755262	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11757371	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11757622	0.85[ASN][1000 genomes]
rs11759754	0.85[ASN][1000 genomes]
rs13552	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16890376	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16890395	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17648097	0.85[ASN][1000 genomes]
rs17648634	0.85[ASN][1000 genomes]
rs17648699	0.85[ASN][1000 genomes]
rs17649606	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17649630	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55898002	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56100831	0.85[ASN][1000 genomes]
rs56136126	0.85[ASN][1000 genomes]
rs59522592	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59810748	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61521259	0.85[ASN][1000 genomes]
rs61705055	0.85[ASN][1000 genomes]
rs68148876	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6925259	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6930340	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs72850806	0.85[ASN][1000 genomes]
rs72850831	0.85[ASN][1000 genomes]
rs72850855	0.85[ASN][1000 genomes]
rs72850856	0.85[ASN][1000 genomes]
rs72850871	0.85[ASN][1000 genomes]
rs72852516	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs72852536	0.85[ASN][1000 genomes]
rs72852555	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72852565	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852588	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs994530	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2754649	chr6:37985025-38147910	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38045600-38107000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:38057200-38109200	Weak transcription	K562	blood
3	chr6:38060000-38108200	Weak transcription	Ovary	ovary
4	chr6:38072200-38108400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:38075200-38118200	Weak transcription	Colonic Mucosa	Colon
6	chr6:38075400-38103800	Weak transcription	Pancreas	Pancrea
7	chr6:38076600-38104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:38078800-38109000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:38078800-38111000	Weak transcription	Fetal Kidney	kidney
10	chr6:38078800-38111000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:38079600-38113800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:38080400-38104800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:38081800-38121800	Weak transcription	Psoas Muscle	Psoas
14	chr6:38083800-38103800	Weak transcription	Esophagus	oesophagus
15	chr6:38084000-38122200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:38084600-38124200	Weak transcription	Hela-S3	cervix
17	chr6:38086600-38102400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:38087200-38101600	Weak transcription	Brain Angular Gyrus	brain
19	chr6:38087600-38101800	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:38087600-38103800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:38087600-38104800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:38087600-38118800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:38087800-38104600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:38088000-38102200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:38088000-38104800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:38089200-38103800	Weak transcription	Gastric	stomach
27	chr6:38089600-38106200	Weak transcription	Placenta	Placenta
28	chr6:38090000-38111000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:38090400-38106200	Weak transcription	NHEK	skin
30	chr6:38091200-38106200	Weak transcription	Dnd41	blood
31	chr6:38091200-38119800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:38091400-38109400	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr6:38091400-38110200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:38091400-38110400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr6:38091400-38116000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:38091400-38141800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:38091800-38107200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:38091800-38109600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr6:38092000-38102600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr6:38092600-38102400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:38092600-38104000	Weak transcription	Thymus	Thymus
42	chr6:38092600-38109000	Weak transcription	Lung	lung
43	chr6:38092800-38112200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:38092800-38117000	Weak transcription	Spleen	Spleen
45	chr6:38093000-38104200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:38093200-38105000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:38094200-38103400	Weak transcription	Fetal Intestine Small	intestine
48	chr6:38094400-38105000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:38095200-38101800	Weak transcription	Fetal Heart	heart
50	chr6:38095200-38102200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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