Variant report

Variant	rs11756102
Chromosome Location	chr6:4614058-4614059
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4609256..4612508-chr6:4614034..4616803,3	MCF-7	breast:
2	chr6:4612784..4615620-chr6:4617174..4619845,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205444	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11751457	0.84[EUR][1000 genomes]
rs11962754	0.82[EUR][1000 genomes]
rs11964426	1.00[CEU][hapmap]
rs11964427	0.85[EUR][1000 genomes]
rs17138534	0.85[EUR][1000 genomes]
rs2235724	0.85[EUR][1000 genomes]
rs377207	0.85[EUR][1000 genomes]
rs378901	0.82[EUR][1000 genomes]
rs385236	0.85[EUR][1000 genomes]
rs385884	0.85[EUR][1000 genomes]
rs390126	0.85[EUR][1000 genomes]
rs390617	0.80[EUR][1000 genomes]
rs413716	0.85[EUR][1000 genomes]
rs418563	0.85[EUR][1000 genomes]
rs421930	0.85[EUR][1000 genomes]
rs424137	0.85[EUR][1000 genomes]
rs438021	0.80[EUR][1000 genomes]
rs453768	0.85[EUR][1000 genomes]
rs4960004	0.85[EUR][1000 genomes]
rs4960009	0.84[EUR][1000 genomes]
rs601192	0.85[EUR][1000 genomes]
rs62384944	0.81[EUR][1000 genomes]
rs6911463	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs6912325	0.87[EUR][1000 genomes]
rs6913171	0.85[EUR][1000 genomes]
rs9328262	0.82[EUR][1000 genomes]
rs9502199	0.85[EUR][1000 genomes]
rs9502200	0.85[EUR][1000 genomes]
rs9502206	0.84[EUR][1000 genomes]
rs9504151	0.85[EUR][1000 genomes]
rs9504156	0.85[EUR][1000 genomes]
rs9504159	0.84[EUR][1000 genomes]
rs9504163	0.81[EUR][1000 genomes]
rs9504165	1.00[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs9504166	0.85[EUR][1000 genomes]
rs9504168	0.86[EUR][1000 genomes]
rs9504169	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3421990	chr6:4446933-4659639	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883415	chr6:4546491-4629654	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv970370	chr6:4605843-4619763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	nsv528627	chr6:4614058-4731340	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4606000-4616800	Enhancers	Fetal Muscle Leg	muscle
2	chr6:4607600-4615200	Weak transcription	Lung	lung
3	chr6:4610800-4614200	Enhancers	Fetal Stomach	stomach
4	chr6:4612200-4614200	Enhancers	Rectal Smooth Muscle	rectum
5	chr6:4613000-4614200	Enhancers	HSMMtube	muscle
6	chr6:4613000-4614400	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:4613200-4614400	Enhancers	Fetal Muscle Trunk	muscle
8	chr6:4613200-4614800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:4613400-4614800	Enhancers	Stomach Smooth Muscle	stomach
10	chr6:4613600-4614200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:4613600-4616200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:4613600-4619200	Weak transcription	Fetal Heart	heart
13	chr6:4613800-4614200	Bivalent Enhancer	HSMM	muscle
14	chr6:4613800-4616000	Weak transcription	Adipose Nuclei	Adipose
15	chr6:4613800-4617600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:4613800-4621600	Weak transcription	Right Atrium	heart

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