Variant report

Variant	rs11756428
Chromosome Location	chr6:26305187-26305188
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:26298226..26302265-chr6:26302450..26306372,5	MCF-7	breast:
2	chr6:26295061..26296606-chr6:26303262..26305423,2	MCF-7	breast:
3	chr6:26303673..26307006-chr6:26594782..26597382,3	K562	blood:
4	chr6:26304711..26307029-chr6:26338839..26340987,2	MCF-7	breast:
5	chr6:26305172..26308456-chr6:26309318..26312208,7	MCF-7	breast:
6	chr6:26302784..26306678-chr6:27115101..27117837,4	K562	blood:

Variant related genes	Relation type
ENSG00000265565	Chromatin interaction
ENSG00000146109	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11751564	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11751567	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11754168	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11754384	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11754746	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11755795	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11757214	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11757736	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759682	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11962642	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2006005	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2006006	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34434694	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823157	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41266829	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41266831	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56768418	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57145038	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57530446	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59225416	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60122474	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60228626	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61082103	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61213538	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61625476	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901243	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6916643	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6938696	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73393491	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73393492	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73395313	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73395314	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73397320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73397336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73397339	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73397347	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73397364	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73399366	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399394	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401208	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73401228	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401231	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401236	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73401243	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7740838	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7761779	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773163	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9688734	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
6	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
7	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
8	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
9	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
10	nsv601173	chr6:26239404-26322524	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	184 gene(s)	inside rSNPs	diseases
11	nsv482729	chr6:26291011-26470898	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26298000-26305200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:26304400-26306400	Flanking Active TSS	Dnd41	blood
3	chr6:26304400-26306400	Active TSS	GM12878-XiMat	blood
4	chr6:26304600-26305200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:26304600-26305600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr6:26304600-26305800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:26304800-26305200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
8	chr6:26304800-26305200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
9	chr6:26304800-26305200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr6:26304800-26305200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chr6:26304800-26305200	Active TSS	K562	blood
12	chr6:26304800-26305400	Active TSS	Primary hematopoietic stem cells	blood
13	chr6:26304800-26305400	Active TSS	Fetal Intestine Large	intestine
14	chr6:26304800-26305800	Active TSS	Primary B cells from peripheral blood	blood
15	chr6:26304800-26305800	Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr6:26304800-26305800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:26304800-26305800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:26304800-26305800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:26304800-26305800	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr6:26304800-26305800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
21	chr6:26304800-26306000	Active TSS	H1 Cell Line	embryonic stem cell
22	chr6:26304800-26306000	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr6:26304800-26306000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:26304800-26306000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:26304800-26306000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:26304800-26306000	Active TSS	NHLF	lung
27	chr6:26304800-26306200	Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr6:26304800-26306200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:26304800-26306200	Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr6:26304800-26306400	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr6:26304800-26306400	Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr6:26304800-26306400	Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr6:26304800-26306400	Active TSS	A549	lung
34	chr6:26304800-26306800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:26305000-26305200	Active TSS	Primary T cells fromperipheralblood	blood
36	chr6:26305000-26305200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:26305000-26305200	Active TSS	HUVEC	blood vessel
38	chr6:26305000-26305400	Flanking Active TSS	Primary T cells from cord blood	blood
39	chr6:26305000-26305400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:26305000-26305400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr6:26305000-26305400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:26305000-26305400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:26305000-26305400	Flanking Active TSS	Fetal Thymus	thymus
44	chr6:26305000-26305400	Active TSS	Lung	lung
45	chr6:26305000-26305600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:26305000-26305600	Active TSS	Placenta	Placenta
47	chr6:26305000-26305600	Active TSS	Rectal Mucosa Donor 29	rectum
48	chr6:26305000-26305600	Active TSS	Right Ventricle	heart
49	chr6:26305000-26305600	Flanking Active TSS	HepG2	liver
50	chr6:26305000-26305800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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