Variant report

Variant	rs11756694
Chromosome Location	chr6:166757656-166757657
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:166755072-166758044	K562	blood:	n/a	n/a
2	POLR2A	chr6:166754842-166757788	GM12891	blood:	n/a	n/a
3	POLR2A	chr6:166757573-166758057	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:166754173..166757774-chr6:166795355..166798060,3	MCF-7	breast:
2	chr6:166753320..166757958-chr6:166794622..166799153,8	K562	blood:
3	chr6:166751208..166754791-chr6:166757264..166760335,3	MCF-7	breast:
4	chr6:166719852..166722547-chr6:166755922..166758056,2	K562	blood:
5	chr6:166756132..166758070-chr6:166759956..166762577,2	MCF-7	breast:

No data

Variant related genes	Relation type
SFT2D1	TF binding region
ENSG00000176381	Chromatin interaction
ENSG00000261420	Chromatin interaction
ENSG00000060762	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12190616	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191010	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201436	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166756800-166758400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:166756800-166758600	Enhancers	Placenta	Placenta
3	chr6:166757000-166757800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr6:166757000-166757800	Enhancers	HSMMtube	muscle
5	chr6:166757000-166757800	Enhancers	NHEK	skin
6	chr6:166757000-166758000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:166757000-166758000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:166757000-166758400	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:166757000-166765200	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:166757000-166765400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:166757000-166779200	Weak transcription	Right Atrium	heart
12	chr6:166757200-166757800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:166757200-166757800	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr6:166757200-166757800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:166757200-166757800	Enhancers	Primary B cells from cord blood	blood
16	chr6:166757200-166757800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:166757200-166757800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:166757200-166757800	Enhancers	GM12878-XiMat	blood
19	chr6:166757200-166758000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:166757200-166758400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:166757200-166760000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:166757200-166761000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:166757400-166757800	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr6:166757400-166757800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr6:166757400-166758000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:166757400-166759200	Enhancers	K562	blood
27	chr6:166757400-166759800	Weak transcription	Liver	Liver
28	chr6:166757400-166760000	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr6:166757400-166760400	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr6:166757400-166762600	Enhancers	HepG2	liver
31	chr6:166757600-166757800	Enhancers	H1 Cell Line	embryonic stem cell
32	chr6:166757600-166757800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:166757600-166758600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:166757600-166759800	Weak transcription	Primary monocytes fromperipheralblood	blood

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