Variant report

Variant	rs11756702
Chromosome Location	chr6:161649213-161649214
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:161648859..161650447-chr6:161676937..161679917,2	K562	blood:
2	chr6:161626465..161628692-chr6:161647387..161649703,2	K562	blood:
3	chr6:161646694..161648332-chr6:161648631..161651457,2	MCF-7	breast:
4	chr6:161627192..161630553-chr6:161645842..161649703,4	K562	blood:
5	chr6:161646998..161649019-chr6:161649045..161652363,4	K562	blood:
6	chr6:161641039..161643585-chr6:161647425..161650031,3	K562	blood:
7	chr6:161411442..161414851-chr6:161647170..161650760,5	K562	blood:
8	chr6:161638711..161640555-chr6:161647734..161649604,2	K562	blood:
9	chr6:161643850..161652009-chr6:161690298..161699013,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272841	Chromatin interaction
ENSG00000026652	Chromatin interaction
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11970608	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17551959	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17627837	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798939	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775164	0.99[EUR][1000 genomes]
rs9295144	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456644	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456645	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458163	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161634200-161649800	Weak transcription	Pancreas	Pancrea
2	chr6:161636600-161655000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:161636600-161656000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:161637000-161650000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:161637600-161649800	Weak transcription	NHLF	lung
6	chr6:161638200-161693800	Weak transcription	Fetal Intestine Small	intestine
7	chr6:161638400-161650600	Weak transcription	Esophagus	oesophagus
8	chr6:161638600-161649400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:161638600-161668000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:161639000-161650000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:161639000-161666200	Weak transcription	Aorta	Aorta
12	chr6:161639200-161664400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:161639400-161650000	Weak transcription	Brain Germinal Matrix	brain
14	chr6:161639800-161650200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:161641800-161649400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:161643000-161649800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:161643200-161649800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:161643800-161650400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:161644000-161650000	Enhancers	Primary T cells fromperipheralblood	blood
20	chr6:161644400-161655000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:161644600-161651800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:161645200-161649400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr6:161646000-161653200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:161646200-161649600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr6:161646600-161649600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:161646600-161649600	Enhancers	Spleen	Spleen
27	chr6:161646600-161649800	Enhancers	Brain Cingulate Gyrus	brain
28	chr6:161646600-161649800	Enhancers	Ovary	ovary
29	chr6:161646600-161650800	Enhancers	Fetal Heart	heart
30	chr6:161646600-161651000	Enhancers	Placenta	Placenta
31	chr6:161646600-161651000	Enhancers	Left Ventricle	heart
32	chr6:161646800-161649400	Enhancers	Brain Angular Gyrus	brain
33	chr6:161646800-161649600	Genic enhancers	Fetal Stomach	stomach
34	chr6:161646800-161649800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:161647000-161649600	Enhancers	Right Atrium	heart
36	chr6:161647000-161650000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:161647000-161650000	Enhancers	Colon Smooth Muscle	Colon
38	chr6:161647000-161650200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:161647200-161649800	Enhancers	Rectal Smooth Muscle	rectum
40	chr6:161647200-161650400	Weak transcription	NHEK	skin
41	chr6:161647200-161663200	Weak transcription	Thymus	Thymus
42	chr6:161647400-161650000	Enhancers	Adipose Nuclei	Adipose
43	chr6:161647400-161651000	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr6:161647600-161650000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:161647800-161649400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:161647800-161649400	Enhancers	Placenta Amnion	Placenta Amnion
47	chr6:161647800-161651000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr6:161648000-161649800	Enhancers	Primary hematopoietic stem cells	blood
49	chr6:161648000-161649800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr6:161648000-161650000	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links