Variant report

Variant	rs11757292
Chromosome Location	chr6:13251743-13251744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13244619..13246352-chr6:13250637..13252515,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11758225	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873893	0.85[YRI][hapmap]
rs1706941	0.83[YRI][hapmap]
rs4464796	0.93[EUR][1000 genomes]
rs546673	0.86[YRI][hapmap]
rs55739420	0.96[EUR][1000 genomes]
rs55903603	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56380716	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57728205	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs578290	0.86[EUR][1000 genomes]
rs58425216	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58875474	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs595864	0.84[YRI][hapmap]
rs6458744	0.89[EUR][1000 genomes]
rs6928672	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73725628	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73725649	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757265	0.93[EUR][1000 genomes]
rs7769621	0.82[EUR][1000 genomes]
rs7770755	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432849	chr6:13225077-13253733	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv981320	chr6:13247460-13253055	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1034016	chr6:13248122-13418225	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13230600-13253400	Weak transcription	Spleen	Spleen
2	chr6:13233200-13256000	Weak transcription	Right Ventricle	heart
3	chr6:13234600-13267200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:13237600-13252800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:13239000-13253200	Weak transcription	Aorta	Aorta
6	chr6:13242800-13256000	Weak transcription	Pancreas	Pancrea
7	chr6:13248600-13256600	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:13248600-13260200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:13248800-13256200	Weak transcription	Brain Germinal Matrix	brain
10	chr6:13248800-13266600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:13249000-13257800	Weak transcription	Brain Anterior Caudate	brain
12	chr6:13249000-13266000	Weak transcription	Fetal Brain Female	brain
13	chr6:13249200-13253600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:13249200-13254400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:13249200-13272200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:13249600-13252200	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:13249600-13256400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:13249800-13287000	Weak transcription	Fetal Brain Male	brain
19	chr6:13251000-13251800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:13251000-13253000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:13251000-13253000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:13251000-13253200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:13251000-13253200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:13251000-13259000	Weak transcription	Fetal Heart	heart
25	chr6:13251200-13251800	Enhancers	Left Ventricle	heart
26	chr6:13251200-13253200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:13251400-13251800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:13251400-13251800	Enhancers	Placenta	Placenta
29	chr6:13251400-13251800	ZNF genes & repeats	Lung	lung
30	chr6:13251400-13251800	Bivalent/Poised TSS	HepG2	liver
31	chr6:13251400-13256400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:13251600-13252800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:13251600-13252800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:13251600-13253000	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr6:13251600-13253200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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