Variant report

Variant	rs117576921
Chromosome Location	chr3:47019524-47019525
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:47019498-47019557	MCF-7	breast:	n/a	n/a
2	POLR2A	chr3:47019298-47019905	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47019120..47020713-chr3:47422216..47424593,2	K562	blood:

Variant related genes	Relation type
CCDC12	TF binding region
NBEAL2	TF binding region
ENSG00000260236	Chromatin interaction
ENSG00000076201	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv536558	chr3:46706571-47024756	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv876755	chr3:46895109-47061183	Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv3461834	chr3:46977730-47173228	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv3461835	chr3:46977822-47173168	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv3461836	chr3:46977822-47173168	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1009396	chr3:46994991-47048166	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
8	esv1800172	chr3:47013346-47049306	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv590209	chr3:47018214-47050784	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
10	nsv876757	chr3:47018214-47058057	Active TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47017200-47020000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:47018200-47020600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:47018200-47020600	Weak transcription	Aorta	Aorta
4	chr3:47018200-47020600	Enhancers	Spleen	Spleen
5	chr3:47018400-47019600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:47018400-47020400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:47018400-47020400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:47018400-47020400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:47018400-47020400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:47018400-47020400	Enhancers	Placenta	Placenta
11	chr3:47018400-47020400	Enhancers	Stomach Mucosa	stomach
12	chr3:47018400-47020600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:47018400-47020600	Weak transcription	HSMMtube	muscle
14	chr3:47018400-47020600	Enhancers	HUVEC	blood vessel
15	chr3:47018400-47020800	Weak transcription	Ovary	ovary
16	chr3:47018400-47021000	Flanking Active TSS	Dnd41	blood
17	chr3:47018600-47020400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:47018600-47020400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr3:47018600-47020400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr3:47018600-47020600	Weak transcription	Right Atrium	heart
21	chr3:47018800-47019600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr3:47018800-47019600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr3:47018800-47019600	Weak transcription	Brain Substantia Nigra	brain
24	chr3:47018800-47019600	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr3:47018800-47019600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:47018800-47019800	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr3:47018800-47019800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:47018800-47019800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr3:47018800-47020000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:47018800-47020200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr3:47018800-47020200	Enhancers	Primary B cells from peripheral blood	blood
32	chr3:47018800-47020400	Enhancers	H1 Cell Line	embryonic stem cell
33	chr3:47018800-47020400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr3:47018800-47020400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:47018800-47020400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr3:47018800-47020400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr3:47018800-47020400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:47018800-47020400	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr3:47018800-47020400	Enhancers	Primary B cells from cord blood	blood
40	chr3:47018800-47020400	Enhancers	Primary T cells from cord blood	blood
41	chr3:47018800-47020400	Enhancers	Primary T cells fromperipheralblood	blood
42	chr3:47018800-47020400	Enhancers	Primary hematopoietic stem cells	blood
43	chr3:47018800-47020400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr3:47018800-47020400	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr3:47018800-47020400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr3:47018800-47020400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr3:47018800-47020400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr3:47018800-47020400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr3:47018800-47020400	Enhancers	Adipose Nuclei	Adipose
50	chr3:47018800-47020400	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links