Variant report

Variant	rs11758990
Chromosome Location	chr6:75747378-75747379
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11754104	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11758551	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4291062	0.87[EUR][1000 genomes]
rs4413578	0.85[EUR][1000 genomes]
rs4518462	0.87[EUR][1000 genomes]
rs4560603	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4569931	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4571524	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56310973	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs636885	0.88[CHB][hapmap]
rs636917	0.88[CHB][hapmap]
rs6453809	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6928356	0.94[EUR][1000 genomes]
rs73462024	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11758990	COL12A1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75735200-75750400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:75745400-75752600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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