Variant report

Variant	rs117595272
Chromosome Location	chr11:10689827-10689828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10689514..10690158-chr5:36806169..36807035,2	MCF-7	breast:
2	chr11:10689241..10690956-chr11:10698574..10700529,2	K562	blood:
3	chr11:10688135..10690797-chr11:10695097..10696777,2	K562	blood:
4	chr11:10689604..10691853-chr11:10718013..10720548,2	K562	blood:
5	chr11:10687959..10690834-chr11:10758767..10760971,2	K562	blood:
6	chr11:10688907..10690488-chr11:10693556..10695062,2	K562	blood:
7	chr11:10686058..10688524-chr11:10689302..10691752,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv2753762	chr11:10688217-10701438	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv7676	chr11:10689144-10734139	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10680600-10696200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:10682200-10690400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:10683800-10692400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:10684400-10692000	Enhancers	Ovary	ovary
5	chr11:10685000-10690800	Enhancers	NHDF-Ad	bronchial
6	chr11:10686000-10690400	Weak transcription	Spleen	Spleen
7	chr11:10686000-10692200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:10686200-10690400	Weak transcription	Fetal Intestine Small	intestine
9	chr11:10686200-10690400	Weak transcription	Placenta	Placenta
10	chr11:10686400-10690400	Enhancers	Colon Smooth Muscle	Colon
11	chr11:10686400-10690400	Weak transcription	Right Ventricle	heart
12	chr11:10686800-10691400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:10687200-10692000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:10687400-10690400	Enhancers	Rectal Smooth Muscle	rectum
15	chr11:10687400-10691000	Enhancers	NHLF	lung
16	chr11:10687400-10691400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr11:10687600-10690400	Weak transcription	Lung	lung
18	chr11:10687600-10690400	Weak transcription	Small Intestine	intestine
19	chr11:10687600-10690800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:10687600-10691800	Enhancers	Osteobl	bone
21	chr11:10687800-10690400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:10687800-10690800	Enhancers	Hela-S3	cervix
23	chr11:10688000-10690000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:10688000-10691000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr11:10688000-10692200	Enhancers	HSMMtube	muscle
26	chr11:10688200-10691600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:10688200-10691800	Enhancers	Brain Hippocampus Middle	brain
28	chr11:10688200-10692000	Enhancers	Adipose Nuclei	Adipose
29	chr11:10688200-10692200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:10688200-10692200	Enhancers	HSMM	muscle
31	chr11:10688400-10692200	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr11:10688600-10690400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr11:10688600-10690800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:10688600-10690800	Weak transcription	HepG2	liver
35	chr11:10688600-10695600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:10689000-10690000	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr11:10689000-10690200	Enhancers	Brain Cingulate Gyrus	brain
38	chr11:10689000-10690400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr11:10689000-10690400	Weak transcription	Right Atrium	heart
40	chr11:10689000-10690400	Enhancers	Stomach Smooth Muscle	stomach
41	chr11:10689000-10691000	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr11:10689000-10692400	Enhancers	Fetal Stomach	stomach
43	chr11:10689200-10690400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:10689200-10690400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:10689200-10690400	Weak transcription	Brain Anterior Caudate	brain
46	chr11:10689200-10690800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr11:10689200-10691000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:10689200-10691000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:10689400-10690800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:10689400-10690800	Weak transcription	NH-A	brain

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