Variant report

Variant	rs11760855
Chromosome Location	chr7:137086826-137086827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7792568	0.83[JPT][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11760855	LRGUK	cis	parietal	SCAN
rs11760855	RAB19	cis	cerebellum	SCAN
rs11760855	TRIM24	cis	cerebellum	SCAN

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137070200-137087000	Weak transcription	Brain Angular Gyrus	brain
2	chr7:137073800-137095600	Weak transcription	HSMMtube	muscle
3	chr7:137075000-137087000	Weak transcription	Brain Anterior Caudate	brain
4	chr7:137076000-137087000	Weak transcription	Fetal Stomach	stomach
5	chr7:137080600-137106000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:137081200-137087200	Weak transcription	Brain Germinal Matrix	brain
7	chr7:137081200-137090000	Weak transcription	Aorta	Aorta
8	chr7:137082200-137089600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:137083400-137087000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr7:137083600-137087200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:137084200-137087200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:137084200-137087400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:137084800-137087400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:137084800-137090200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:137085200-137102400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:137085400-137087200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:137085400-137087400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:137085400-137087400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:137085400-137089200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:137085400-137090000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr7:137085400-137091600	Weak transcription	HSMM	muscle
22	chr7:137085600-137089600	Weak transcription	Osteobl	bone
23	chr7:137085800-137087400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:137085800-137089200	Weak transcription	NHDF-Ad	bronchial
25	chr7:137085800-137089600	Weak transcription	NH-A	brain
26	chr7:137086000-137087200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:137086000-137102200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:137086000-137102400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:137086200-137087200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr7:137086200-137087400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr7:137086400-137087400	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr7:137086400-137087400	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr7:137086400-137087600	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr7:137086600-137087200	Enhancers	Brain Substantia Nigra	brain
35	chr7:137086600-137087400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:137086600-137087400	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr7:137086600-137087400	Enhancers	Brain Cingulate Gyrus	brain
38	chr7:137086600-137087400	Enhancers	Brain Hippocampus Middle	brain
39	chr7:137086600-137088400	Enhancers	H1 Cell Line	embryonic stem cell
40	chr7:137086600-137088400	Enhancers	Fetal Brain Female	brain

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