Variant report

Variant	rs11760913
Chromosome Location	chr7:27987582-27987583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27986771..27988472-chr7:27993865..27996393,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17622746	0.86[CHB][hapmap]
rs2040666	0.86[CHB][hapmap]
rs3919460	0.86[CHB][hapmap]
rs4722747	0.86[CHB][hapmap]
rs6968704	1.00[CHB][hapmap]
rs7783465	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1024819	chr7:27949955-28020969	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27941400-27990800	Weak transcription	Primary T cells from cord blood	blood
2	chr7:27942400-28005600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr7:27957600-28000800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:27974000-27990800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr7:27976600-27991600	Weak transcription	Osteobl	bone
6	chr7:27977000-28001400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:27977400-27991600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:27978600-27993000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:27979200-28000000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:27980200-28000000	Weak transcription	Lung	lung
11	chr7:27980400-27987600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:27980400-27988800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:27980400-28000000	Weak transcription	Pancreas	Pancrea
14	chr7:27980400-28017200	Weak transcription	Aorta	Aorta
15	chr7:27980600-27993400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr7:27982200-27989400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:27983200-27989600	Enhancers	Fetal Heart	heart
18	chr7:27983400-27989200	Enhancers	Colon Smooth Muscle	Colon
19	chr7:27983600-27989000	Enhancers	Rectal Smooth Muscle	rectum
20	chr7:27984200-27989800	Enhancers	HSMMtube	muscle
21	chr7:27984600-27988400	Weak transcription	Primary B cells from cord blood	blood
22	chr7:27985000-27990200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:27985200-27987600	Weak transcription	Right Atrium	heart
24	chr7:27985600-27988600	Enhancers	Brain Hippocampus Middle	brain
25	chr7:27985600-27991200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr7:27986000-27987800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr7:27986000-27987800	Enhancers	Brain Substantia Nigra	brain
28	chr7:27986000-27988200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:27986000-27988800	Enhancers	Brain Angular Gyrus	brain
30	chr7:27986000-27989400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr7:27986200-27987600	Enhancers	Brain Anterior Caudate	brain
32	chr7:27986200-27987800	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr7:27986200-27989000	Enhancers	Brain Cingulate Gyrus	brain
34	chr7:27986200-27989000	Weak transcription	Psoas Muscle	Psoas
35	chr7:27986600-27991400	Weak transcription	Adipose Nuclei	Adipose
36	chr7:27986600-27991600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr7:27987000-27987600	Enhancers	Fetal Kidney	kidney
38	chr7:27987000-27987800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:27987000-27987800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:27987000-27987800	Enhancers	NHDF-Ad	bronchial
41	chr7:27987200-27987800	Enhancers	Right Ventricle	heart
42	chr7:27987200-27988800	Enhancers	Muscle Satellite Cultured Cells	--
43	chr7:27987200-27988800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:27987200-27989200	Enhancers	HSMM	muscle
45	chr7:27987200-27990200	Enhancers	Fetal Muscle Leg	muscle
46	chr7:27987400-27987800	Enhancers	Fetal Stomach	stomach
47	chr7:27987400-27987800	Enhancers	Gastric	stomach
48	chr7:27987400-27987800	Enhancers	Ovary	ovary
49	chr7:27987400-27987800	Enhancers	Stomach Smooth Muscle	stomach
50	chr7:27987400-27988000	Enhancers	Fetal Muscle Trunk	muscle

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