Variant report

Variant	rs11761131
Chromosome Location	chr7:140082670-140082671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140075072..140077306-chr7:140082163..140084967,2	K562	blood:
2	chr7:140082007..140083740-chr7:140084020..140086777,2	K562	blood:

Variant related genes	Relation type
ENSG00000238868	Chromatin interaction
ENSG00000202472	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11761571	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4133258	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55953323	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56402448	0.86[ASN][1000 genomes]
rs66646584	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72611553	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72611554	0.86[ASN][1000 genomes]
rs72611555	0.81[AFR][1000 genomes]
rs72611556	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022919	chr7:140043299-140120546	Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2762706	chr7:140054170-140119629	Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv522190	chr7:140066411-140130663	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140033600-140096000	Weak transcription	Stomach Mucosa	stomach
2	chr7:140034800-140085600	Weak transcription	Psoas Muscle	Psoas
3	chr7:140042000-140084800	Weak transcription	Hela-S3	cervix
4	chr7:140047600-140084200	Weak transcription	Fetal Brain Male	brain
5	chr7:140049200-140090200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:140052000-140097400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:140058600-140096000	Weak transcription	Small Intestine	intestine
8	chr7:140058800-140084400	Weak transcription	Gastric	stomach
9	chr7:140058800-140097200	Weak transcription	Brain Anterior Caudate	brain
10	chr7:140059400-140091400	Weak transcription	Fetal Heart	heart
11	chr7:140068000-140089000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:140069600-140091800	Weak transcription	Esophagus	oesophagus
13	chr7:140076400-140088800	Weak transcription	GM12878-XiMat	blood
14	chr7:140076600-140084800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:140076600-140090000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr7:140076600-140090200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr7:140076800-140084400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr7:140076800-140089600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr7:140076800-140089600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr7:140076800-140096200	Weak transcription	NHLF	lung
21	chr7:140077200-140084600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:140078200-140090000	Weak transcription	Pancreas	Pancrea
23	chr7:140080200-140084200	Weak transcription	NHEK	skin
24	chr7:140080200-140084600	Weak transcription	HUVEC	blood vessel
25	chr7:140080200-140084800	Weak transcription	Fetal Kidney	kidney
26	chr7:140080200-140085400	Weak transcription	Brain Substantia Nigra	brain
27	chr7:140080200-140089400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr7:140080200-140089800	Weak transcription	HSMM	muscle
29	chr7:140080200-140090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr7:140080200-140090200	Weak transcription	HMEC	breast
31	chr7:140080200-140095800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr7:140080200-140096000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr7:140080200-140097200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:140080200-140097200	Weak transcription	HSMMtube	muscle
35	chr7:140080200-140097600	Weak transcription	Brain Angular Gyrus	brain
36	chr7:140080600-140085000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:140080600-140088800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:140080600-140089000	Weak transcription	Spleen	Spleen
39	chr7:140080600-140089600	Weak transcription	Brain Hippocampus Middle	brain
40	chr7:140080600-140089800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr7:140080600-140090000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr7:140080600-140090200	Weak transcription	Primary T cells from cord blood	blood
43	chr7:140080600-140090400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr7:140080600-140096200	Weak transcription	HepG2	liver
45	chr7:140080600-140097400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr7:140080800-140085200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr7:140080800-140089800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr7:140080800-140090600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr7:140080800-140096200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr7:140081400-140097200	Weak transcription	Brain Germinal Matrix	brain

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